Construct: ORF ccsbBroadEn_09578

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001742.1_s300c1, BRDN0000386615
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PASD1 (139135)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 139135 PASD1 PAS domain containing repre... NM_173493.3 99.9% 100% 33A>G
2 human 139135 PASD1 PAS domain containing repre... XM_011531102.2 99.8% 99.8% 33A>G;1434_1435insCAG
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2385
ORF length:
2319
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA GATGAGAGGG GAAAAGAGAA GAGACAAGGT CAATCCAAAA AGCTCTCAAA
121GGAAATTAAA CTGGATTCCA TCATTTCCTA CCTATGATTA CTTCAACCAA GTGACGCTAC
181AGTTATTAGA TGGCTTTATG ATTACACTGA GCACAGATGG AGTGATCATT TGTGTGGCTG
241AAAACATCTC TTCTCTTCTT GGACATTTAC CAGCTGAGAT TGTGGGCAAA AAATTATTAA
301GCCTTCTGCC TGATGAAGAG AAAGATGAAG TCTACCAAAA GATTATTCTC AAATTTCCTT
361TACTAAACTC AGAAACACAT ATTGAATTTT GCTGTCATTT AAAAAGAGGA AATGTCGAAC
421ATGGTGATAG TTCTGCTTAC GAAAACGTGA AATTTATTGT GAATGTAAGA GATATTTGTA
481ATGAGTTTCC TGTGGTCTTT AGTGGCTTGT TTTCCAGCCA CCTCTGTGCT GACTTTGCTG
541CATGTGTTCC TCAGGAGGAT CGGCTTTATC TTGTGGGAAA TGTTTGCATT CTCAGGACTC
601AGCTCCTGCA GCAACTTTAC ACTTCAAAGG CAGTCAGTGA TGAAGCTGTA CTTACACAAG
661ATTCAGATGA GGAACCTTTT GTGGGAGAGC TCAGTAGCTC TCAAGGTCAA AGAGGACACA
721CTAGCATGAA AGCCGTGTAC GTTGAACCCG CTGCTGCTGC TGCTGCTGCT GCTATCTCAG
781ACGACCAAAT TGATATTGCA GAGGTTGAGC AGTATGGACC ACAAGAAAAC GTTCACATGT
841TTGTAGATTC TGATTCAACT TATTGCTCCA GTACAGTTTT CCTGGATACT ATGCCTGAAT
901CTCCAGCCTT ATCCTTGCAA GACTTTCGAG GTGAGCCTGA GGTGAATCCA TTGTACAGGG
961CAGACCCAGT GGACCTGGAG TTCTCGGTGG ATCAGGTGGA CTCAGTGGAC CAGGAGGGCC
1021CAATGGACCA GCAGGACCCA GAGAACCCAG TTGCCCCGTT GGACCAGGCA GGCCTGATGG
1081ATCCAGTGGA TCCAGAGGAC TCAGTGGACC TGGGGGCTGC TGGCGCAAGT GCTCAGCCAT
1141TACAGCCATC ATCACCAGTT GCATATGACA TCATTAGCCA GGAACTGGAA CTGATGAAGA
1201AGTTGAAGGA GCAGCTAGAA GAGAGGACTT GGTTGCTGCA TGATGCCATC CAAAACCAGC
1261AGAATGCATT GGAATTGATG ATGGATCACC TTCAGAAGCA GCCAAACACA TTACGCCACG
1321TTGTCATTCC TGATCTCCAA TCTTCGGAGG CAGTGCCCAA GAAACAACAG AAACAACACG
1381CTGGGCAAGT GAAGCGGCCT CTCCCACATC CCAAGGACGT CAAGTGTTTC TGTGGTTTAT
1441CTTTATCCAA CTCTCTCAAA AACACTGGGG AGCTTCAGGA GCCTTGTGTT GCCTTCAACC
1501AGCAGCAACT GGTGCAGCAA GAACAACACC TGAAGGAGCA GCAGCGGCAG CTGCGGGAGC
1561AGCTGCAACA GCTGAGAGAG CAAAGGAAGG TGCAGAAGCA GAAGAAGATG CAGGAGAAGA
1621AGAAGCTGCA GGAGCAGAAA ATGCAGGAGA AGAAGAAGCT GCAGGAGCAG AGGCGGCAAA
1681AGAAGAAGAA GCTACAGGAG CGGAAGAAGT GGCAGGGGCA GATGCTACAG AAAGAGCCAG
1741AGGAGGAGCA GCAGAAGCAG CAGCTGCAAG AGCAGCCACT GAAGCATAAT GTCATCGTGG
1801GGAATGAGAG GGTGCAGATA TGCCTGCAAA ACCCACGTGA CGTATCTGTG CCCCTCTGCA
1861ATCACCCTGT TAGATTTTTA CAGGCCCAAC CCATTGTTCC TGTCCAGAGA GCAGCTGAAC
1921AACAGCCCTC TGGCTTCTAT CAAGATGAAA ACTGTGGGCA ACAGGAAGAT GAGAGTCAAA
1981GTTTTTATCC TGAGGCGTAT CAAGGGCCCC CCGTGAACCA GCTGCCATTG ATAGATACCT
2041CAAACTCTGA GGCAATTTCT TCTTCCAGCA TTCCTCAGTT TCCCATAACT TCAGACTCAA
2101CCATAAGCAC CCTGGAGACC CCACAGGATT ACATCCGGCT TTGGCAAGAG TTGTCTGATT
2161CACTCGGTCC TGTTGTCCAA GTGAACACTT GGTCTTGCGA TGAGCAGGGC ACCCTGCACG
2221GCCAACCCAC CTACCATCAG GTGCAAGTTT CTGAGGTAGG AGTCGAGGGA CCTCCTGATC
2281CACAGGCTTT CCAAGGCCCT GCTGCATACC AGCCAGACCA GATGAGATCT GCGGAGCAGA
2341CCAGATTGAT GCCTGCAGAG CAACGTGACT CAAATAAGCC GTGCTACCCA ACTTTCTTGT
2401ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)