Construct: ORF ccsbBroadEn_09630
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013061.1_s300c1, BRDN0000386476
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C16orf71 (146562)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 146562 | C16orf71 | chromosome 16 open reading ... | NM_139170.3 | 99.6% | 99.2% | (many diffs) |
| 2 | human | 146562 | C16orf71 | chromosome 16 open reading ... | XM_017022976.1 | 99.6% | 99.2% | (many diffs) |
| 3 | human | 146562 | C16orf71 | chromosome 16 open reading ... | XM_017022975.1 | 95.4% | 95% | (many diffs) |
| 4 | human | 146562 | C16orf71 | chromosome 16 open reading ... | XM_005255144.3 | 73.2% | 72.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1626
- ORF length:
- 1560
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC ATCCAACGAT AAAGGCATGG CACCCTCGCT GGGCTCTCCC TGGGCCTCCC 121 GGATGGGGCC CTGGGATGCC ATCCTCAAGG CTGTCAAAGA CCAGCTCCCG TCTCTGGACT 181 CAGACTCCCC TTTGTCGGAC TATGGGGAAG AGGAGCTGTT CATCTTCCAG CGAAACCAAA 241 CCTCCCTGAT TCCAGACCTG TCGGAGGAGC TGGCTGAAGA TCCTGCCGAT GGCGACAAGT 301 CCAGGGCCTG GGTCGCTGCA GCTGAAGAGT CCCTTCCCGA GCCAGTTCTG GTGCCTGCAG 361 AATTGGCCAC AGAACCTGGG TGCAGACAGA ACACAAGGAC AAAGGATGCA TCCTCTCAGG 421 AAGGAAGAGA CCCTGGCAGG CCTTTTGAAA GCTCTGGTGA AGTCAGCGCT CTTCTTGGGA 481 TGGCCGAGGA GCCCCCCAGG TGGCTGGAAG GCGACCTTGG AAGCCTGTCT TTCAACACCA 541 AAGGATCCCA GGGTCCTCCC TGGGACCCAC AGGCCGAAGC CACTCTCTCC TGCCATGAAG 601 GAGACCCAAA GGCAGAGCCC CTCAGCACTG CCTCACAAGA ATCTGTGAAC CGCCGGGCCC 661 TCCGACAGGA GAGAAGGAAG ATGATAGAGA CGGACATCCT CCAGAAAGTC ACCCGGGATG 721 CCTGCGGCCC GACCAGCAGT GACAAAGGTG GGGTGAAGGA GGCGCCCTGC CACGCTGCGG 781 AGTCAGCTCC CAGATCCAAA ATGCCCCTCG TGGAGCCTCC GGAGGGACCA CCAGTGCTCT 841 CGCTCCAGCA ACTTGAAGCG TGGGATTTGG ATGACATCCT TCAGAGTCTG GCGGGACAAG 901 AAGACAACCA GGGAAATCGT GCACCTGGAA CTGTGTGGTG GGCAGCTGAC CACCGCCAAG 961 TTCAAGACTG CATGGTGCCG AGCGCCCACA ACAGGCTCAT GGAACAGCTG GCCCTCCTGT 1021 GCACCACGCA GTCCAAGGCC TCTGCTTGTG CCCGGAAGGT GCCTGCCGAC ACTCCCCAGG 1081 ACACCAAAGA GGCAGATTCA GGAAGCAGAT GTGCCTCAAG GAAGCGGGGC TCCCAGGCTG 1141 GGCCAGGCCC GCAGCTGGCC CAGGGCATGA GGCTTAACGC AGAGTCCCCC ACCATCTTTA 1201 TTGACCTGCG GCAGATGGAG CTACCAGACC ACCTGTCCCC AGAAAGCTCC AGCCACAGCT 1261 CCTCTGACAG TGAGGAGGAG GAGGAGGAAG AGATGGCAGC TCTGGGAGAC GCAGAGGGGG 1321 CATCTCCTTC CTCCCTGGGG CTACGGACCT GTACCGGGAA AAGCCAGCTT CTCCAGCAGC 1381 TCAGGGCCTT TCAGAAGGGG ACAGCCCAGC CCGAGCTGCC TGCCAGCAAG GGGCCCGCGG 1441 GTGGGAGGGC TCAGGCCCTT GAAGACACAG CTGGATCACG AACTGGGAGG AAGCAACACA 1501 TGAAGCTCTG TGCCAAGGGG CAGAGCGCCC AGGCTCGACT CCCAAGAGGC AGGCCCAGAG 1561 CCCTGGGGGA TGTTCCTGAG CCAGGGGCAG CCAGGGAGGC CCTGATGCCT CCTCTGGAGC 1621 AACTATACCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 1681 gttgcaacga ac