Construct: ORF ccsbBroadEn_09650
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009303.1_s300c1, BRDN0000393684
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC155 (147872)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 147872 | CCDC155 | coiled-coil domain containi... | NM_144688.5 | 99.8% | 99.8% | 12C>T;386G>A;547T>C |
| 2 | human | 147872 | CCDC155 | coiled-coil domain containi... | XM_011526488.2 | 99.6% | 99.6% | (many diffs) |
| 3 | human | 147872 | CCDC155 | coiled-coil domain containi... | XM_011526489.3 | 99.6% | 99.6% | (many diffs) |
| 4 | human | 147872 | CCDC155 | coiled-coil domain containi... | XM_011526497.2 | 99.6% | 99.6% | (many diffs) |
| 5 | human | 147872 | CCDC155 | coiled-coil domain containi... | XM_011526490.2 | 99.2% | 99.2% | (many diffs) |
| 6 | human | 147872 | CCDC155 | coiled-coil domain containi... | XM_017026333.1 | 98.1% | 95.7% | (many diffs) |
| 7 | human | 147872 | CCDC155 | coiled-coil domain containi... | XM_011526494.2 | 97.2% | 97.1% | (many diffs) |
| 8 | human | 147872 | CCDC155 | coiled-coil domain containi... | XM_011526495.2 | 94.9% | 94.8% | (many diffs) |
| 9 | human | 147872 | CCDC155 | coiled-coil domain containi... | XM_011526496.2 | 94.9% | 94.8% | (many diffs) |
| 10 | human | 147872 | CCDC155 | coiled-coil domain containi... | XM_005258549.3 | 93.6% | 80.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1752
- ORF length:
- 1686
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CCTGCCTGAG GGCCCGGTGG GTGGCCCCAC TGCGGAAATG TACCTCCGGG 121 AGCGGCCTGA GGAGGCAAGG CTGGGAATGC CGGTCAGCTT GGAGGAGCAA ATACTCAACT 181 CCACGTTCGA AGCTTGTGAC CCTCAGAGGA CAGGCACTGT GGCTGTGGCC CAGGTGCTGG 241 CCTACCTGGA GGCTGTGACA GGCCAGGGCC CCCAGGATGC ACGCCTCCAA ACATTGGCCA 301 ACAGCCTGGA CCCCAATGGG GAGGGCCCTA AGGCCACTGT GGACTTGGAC ACTTTCCTGG 361 TTGTCATGCG TGACTGGATT GCTGCCTGTC AACTACATGG GGGATTAGAG CTGGAAGAGG 421 AGACCGCCTT CCAGGGAGCC CTGACCTCCC AGCAACTGCC ATCTGGATGC CCAGAAGCTG 481 AGGAGCCAGC CAACCTGGAG AGCTTCGGAG GCGAAGACCC CAGACCCGAG CTACAAGCCA 541 CAGCTGACCT GCTGAGCAGC CTGGAGGACC TGGAGCTCAG CAACCGACGT CTGGTTGGGG 601 AGAATGCCAA ACTGCAGCGG AGCATGGAGA CAGCTGAGGA GGGGTCAGCA CGCCTTGGGG 661 AGGAGATCTT GGCTCTGCGT AAGCAGCTTC ACAGCACCCA GCAGGCCCTG CAGTTTGCCA 721 AGGCCATGGA TGAGGAGCTG GAGGACCTGA AGACTCTGGC CAGGAGCCTG GAGGAACAGA 781 ATCGCAGCCT TCTGGCCCAA GCCCGGCAGG CGGAAAAGGA GCAGCAGCAT CTGGTGGCTG 841 AGATGGAGAC TCTGCAGGAG GAGAACGGGA AGCTGCTTGC CGAGCGGGAT GGAGTGAAAA 901 AGAGAAGTCA GGAGCTGGCC ATGGAGAAGG ACACTTTGAA GCGGCAGCTC TTTGAGTGTG 961 AACACCTCAT TTGCCAAAGA GACACCATCC TCTCTGAGCG CACTCGCGAT GTGGAGAGCC 1021 TGGCCCAGAC CCTGGAAGAA TACAGAGTGA CGACGCAGGA ACTGAGGCTG GAGATTTCAC 1081 GCCTGGAGGA GCAGCTGAGT CAGACCTATG AGGGGCCCGA TGAGCTACCT GAAGGGGCCC 1141 AGCTGAGAAG AGTGGGCTGG ACCGAGCTGC TACCCCCATC GCTGGGCTTG GAGATCGAGG 1201 CCATTCGACA GAAACAGGAA GTGGCAACTG CTGATCTCTC CAACCCTCTG TGTGGGGTGT 1261 GGCAGTGGGA GGAAGTCATC CATGAGACCA GTGAGGAAAC TGAGTTTCCA TCTGAAGCCC 1321 CAGCTGGGGG ACAGAGAAAC TTCCAGGGAG AGCCAGCGCA CCCTGAAGAA GGAAGGAAGG 1381 AGCCATCCAT GTGGTTGACC AGAAGAGAGG AAGAGGAGGA TGCAGAGAGC CAGGTCACGG 1441 CTGATCTCCC TGTCCCTCTA GGAGCCCCTC GCCCTGGAGA CATCCCAGAA AACCCTCCAG 1501 AGAGACCTGC GCGGCGGGAA CTCCAGCAAG CCCTGGTGCC TGTGATGAAA AAGCTGGTCC 1561 CAGTCAGGAG GAGGGCCTGG GGCCAGCTCT GCCTGCCCCC ACAGCGGCTC AGAGTCACTC 1621 GACATCCACT GATCCCAGCT CCTGTCCTGG GCCTGCTGCT GCTGCTGCTG CTCTCTGTCC 1681 TGCTGCTTGG CCCGTCCCCA CCTCCCACCT GGCCCCACCT CCAGCTCTGC TACCTCCAGC 1741 CCCCTCCAGT GTGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 1801 caatttgttg caacgaac