Construct: ORF ccsbBroadEn_09702
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009571.1_s300c1, BRDN0000394862
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SH3RF2 (153769)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 153769 | SH3RF2 | SH3 domain containing ring ... | NM_152550.4 | 99.8% | 99.5% | 799C>T;1774T>C;2129G>C |
| 2 | human | 153769 | SH3RF2 | SH3 domain containing ring ... | XM_006714757.1 | 99.8% | 99.5% | 799C>T;1774T>C;2129G>C |
| 3 | human | 153769 | SH3RF2 | SH3 domain containing ring ... | XM_011537569.2 | 99.8% | 99.5% | 799C>T;1774T>C;2129G>C |
| 4 | human | 153769 | SH3RF2 | SH3 domain containing ring ... | XM_017009136.1 | 99.8% | 99.5% | 799C>T;1774T>C;2129G>C |
| 5 | human | 153769 | SH3RF2 | SH3 domain containing ring ... | XM_005268380.2 | 99% | 98.6% | (many diffs) |
| 6 | human | 153769 | SH3RF2 | SH3 domain containing ring ... | XM_011537567.2 | 99% | 98.6% | (many diffs) |
| 7 | human | 153769 | SH3RF2 | SH3 domain containing ring ... | XM_011537568.2 | 99% | 98.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2256
- ORF length:
- 2187
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGATGATTTG ACGTTACTTG ATCTTCTGGA GTGCCCTGTG TGCTTTGAGA 121 AGCTCGATGT CACAGCCAAA GTCCTCCCTT GCCAGCACAC CTTCTGCAAA CCATGTCTAC 181 AGAGGGTTTT CAAGGCCCAC AAAGAGCTGC GGTGCCCCGA ATGCAGGACG CCTGTGTTTT 241 CCAACATTGA GGCGCTGCCG GCCAACCTGC TGCTCGTGCG CCTTCTGGAT GGAGTGCGCT 301 CAGGGCAGAG CTCCGGGAGA GGGGGCTCCT TCCGCAGGCC TGGCACGATG ACCTTGCAGG 361 ATGGCAGGAA AAGCAGGACC AACCCCAGAC GTCTGCAGGC CAGTCCTTTC CGGCTAGTGC 421 CTAATGTCAG AATCCACATG GATGGGGTGC CTCGAGCAAA GGCCTTATGC AACTACAGAG 481 GGCAGAATCC CGGTGACCTA AGGTTTAATA AGGGAGATAT CATCCTTCTC CGGAGACAGC 541 TTGATGAGAA TTGGTACCAG GGGGAAATCA ATGGCATCAG CGGGAACTTC CCAGCCAGCT 601 CCGTGGAAGT CATCAAGCAG CTGCCCCAGC CGCCCCCGCT CTGCAGGGCC CTCTACAACT 661 TCGACCTACG AGGCAAGGAC AAGAGTGAGA ACCAGGATTG CCTGACCTTC CTCAAGGACG 721 ATATCATCAC TGTGATCAGC CGAGTGGATG AGAACTGGGC AGAAGGCAAG TTAGGAGATA 781 AAGTAGGCAT CTTCCCTATC TTGTTTGTAG AGCCAAACCT CACCGCAAGA CACCTTTTAG 841 AGAAGAACAA AGGTCGCCAG TCATCCTGCA CAAAAAACCT GTCCCTGGTG TCCTCGTCCT 901 CCAGAGGCAA CACGTCTACC CTCCGTAGGG GCCCAGGGTC CAGGAGGAAG GTGCCTGGGC 961 AGTTTTCCAT CACAACAGCC TTGAACACTC TCAACCGGAT GGTCCATTCT CCTTCAGGGC 1021 GCCATATGGT AGAGATCAGC ACCCCAGTGC TCATCAGCTC CAGCAACCCC TCTGTGATCA 1081 CCCAGCCCAT GGAGAAAGCA GACGTTCCTT CCAGCTGTGT GGGACAGGTC AGCACTTATC 1141 ACCCCGCACC TGTCTCTCCA GGACATTCCA CAGCCGTGGT CAGTCTGCCT GGCTCCCAGC 1201 AACACCTCTC AGCGAACATG TTTGTAGCCC TGCACTCCTA CTCAGCCCAT GGACCCGATG 1261 AGCTGGACCT GCAAAAGGGA GAAGGCGTCA GGGTCCTGGG GAAGTGCCAG GACGGCTGGC 1321 TCAGGGGCGT CTCCTTGGTC ACCGGGCGAG TCGGCATCTT CCCAAACAAT TACGTCATCC 1381 CCATTTTCAG AAAGACCTCT AGTTTTCCAG ACTCCCGGAG CCCTGGTCTC TACACCACAT 1441 GGACGTTATC CACCTCCTCT GTGTCCTCCC AAGGCAGCAT TTCAGAAGGT GATCCACGGC 1501 AAAGCCGTCC CTTCAAATCC GTCTTTGTGC CCACTGCCAT AGTCAACCCC GTGAGAAGCA 1561 CAGCCGGCCC TGGGACTTTA GGACAAGGGT CTCTTCGGAA AGGGCGGAGC AGCATGAGAA 1621 AGAATGGATC CCTGCAGAGA CCCCTCCAGT CCGGGATCCC CACTCTCGTG GTAGGCTCCC 1681 TCAGACGCAG CCCCACCATG GTCCTTCGGC CTCAGCAGTT CCAATTCTAC CAGCCACAGG 1741 GGATCCCCTC CTCCCCCTCA GCCGTGGTGG TGGAGATGGG GTCCAAGCCT GCCCTCACGG 1801 GGGAGCCCGC CCTCACGTGC ATCAGCAGGG GCAGTGAGGC CCGGATCCAC TCCGCGGCCA 1861 GCTCCCTCAT TATGGAAGAC AAAGAAATCC CCATCAAGAG TGAGCCTCTG CCAAAACCGC 1921 CCGCATCTGC CCCACCATCC ATCCTGGTGA AACCAGAAAA CTCAAGAAAT GGCATCGAAA 1981 AGCAAGTCAA AACCGTGAGA TTTCAGAATT ACAGCCCTCC TCCCACCAAA CATTACACCT 2041 CCCATCCCAC CTCCGGAAAG CCTGAACAGC CAGCCACCCT CAAGGCGTCC CAGCCTGAAG 2101 CAGCGTCCTT GGGCCCAGAG ATGACCGTCC TATTTGCCCA CCGAAGTGGC TGCCACTCCG 2161 GACAGCAGAC AGACCTCCGG AGAAAGTCAG CTCTTGCCAA GGCCACAACC CTGGTGTCCA 2221 CTGCCTCAGG CACGCAGACC GTGTTTCCCA GCAAATTGCC AACTTTCTTG TACAAAGTtg 2281 gcattataag aaagcattgc ttatcaattt gttgcaacga ac