Construct: ORF ccsbBroadEn_09720

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016094.1_s300c1, BRDN0000385434
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TTC16 (158248)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 158248 TTC16 tetratricopeptide repeat do... NM_144965.3 99.7% 99.6% (many diffs)
2 human 158248 TTC16 tetratricopeptide repeat do... NM_001317037.2 98.2% 98.1% (many diffs)
3 human 158248 TTC16 tetratricopeptide repeat do... XM_011518283.2 94.6% 94.5% (many diffs)
4 human 158248 TTC16 tetratricopeptide repeat do... XM_011518284.2 94.2% 94.1% (many diffs)
5 human 158248 TTC16 tetratricopeptide repeat do... XM_011518285.2 88.9% 84% (many diffs)
6 human 158248 TTC16 tetratricopeptide repeat do... XR_002956761.1 85.4% (many diffs)
7 human 158248 TTC16 tetratricopeptide repeat do... XM_011518288.2 83.4% 78.5% (many diffs)
8 human 158248 TTC16 tetratricopeptide repeat do... XM_005251733.2 79.6% 79.4% (many diffs)
9 human 158248 TTC16 tetratricopeptide repeat do... XM_006716970.2 79.3% 66.1% (many diffs)
10 human 158248 TTC16 tetratricopeptide repeat do... XM_006716971.2 79.3% 66.1% (many diffs)
11 human 158248 TTC16 tetratricopeptide repeat do... XM_011518289.3 79.3% 66.1% (many diffs)
12 human 158248 TTC16 tetratricopeptide repeat do... XM_011518290.2 79.3% 66.1% (many diffs)
13 human 158248 TTC16 tetratricopeptide repeat do... XM_005251734.2 74.9% 52.3% (many diffs)
14 human 158248 TTC16 tetratricopeptide repeat do... XM_011518291.2 73.6% 42.7% (many diffs)
15 human 158248 TTC16 tetratricopeptide repeat do... XM_011518292.2 73.6% 42.7% (many diffs)
16 human 158248 TTC16 tetratricopeptide repeat do... XM_011518293.2 70.5% 70.4% (many diffs)
17 human 158248 TTC16 tetratricopeptide repeat do... XM_011518294.3 68.5% 66.2% (many diffs)
18 human 158248 TTC16 tetratricopeptide repeat do... XR_929722.2 68.5% (many diffs)
19 human 158248 TTC16 tetratricopeptide repeat do... XM_011518295.2 67.7% 67.6% (many diffs)
20 human 158248 TTC16 tetratricopeptide repeat do... XR_001746193.2 64.7% (many diffs)
21 human 158248 TTC16 tetratricopeptide repeat do... XM_011518297.2 54.5% 54.2% (many diffs)
22 human 158248 TTC16 tetratricopeptide repeat do... XM_011518298.3 48.3% 47.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2685
ORF length:
2619
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC AGATTCGGAC GAGGATGCCC TGAAGGTTGA CCAGGGCCCC TCACGGGACA
121TCCCAAAGCC ATGGGTGATT CCAGCCCCCA AAGGGATCCT GCAGCACATC TTTGGGACCA
181GCCACGTGTT CCAAAGCATC TGTGATGTAA AACCAAAGGT CACAGGGTTA ACAGTGCCCC
241TCAAAGTCAG GGAATACTAC TCCAGAGGCC AGCAGTGCTT GGAGCAGGCA GACTGGGAGA
301CAGCTGTGCT GCTCTTCTCC CGCGCACTCC ACCTGGACCC ACAGCTGGTG GACTTCTATG
361CCTTACGGGC TGAGGCCTAC CTCCAGCTCT GTGACTTCTC CTCGGCCGCC CAGAACCTGC
421GAAGGGCCTA CTCATTACAG CAGGACAACT GCAAGCACCT GGAGCGCCTC ACCTTTGTGC
481TCTACCTACA GGGACAATGC CTTTTTGAGC AGTGTGCCTT CCTGGATGCC CTGAATGTCT
541TCTCACATGC TGCTGAGCTC CAGCCTGAGA AACCATGCTT CCGTTACCGA TGCATGGCCT
601GTCTCCTGGC CCTCAAGCAG CATCAGGCCT GCCTCACGCT CATCACCAAC GAGCTGAAGC
661AGGACACCAC CAACGCCGAT GTCTACATCT TCCGGGCCAG ACTCTACAAC TTTCTCCAGA
721AGCCCCACCT CTGCTACCGG GACCTGCACA GCGCCTTGCT GTTGAATCCC AAGCACCCGC
781AGGCCAGGAT GCTGCTCCAG AAGATGGTGG CCCAGGCCCA GCAGGCGCGC CAAGATGCGG
841GGATCCTGGC TGTGCAGGGC AAGCTGCAGC ACGCACTGCA GCGGATCAAC CGTGCCATCG
901AGAACAACCC TCTGGACCCC AGTCTCTTCC TCTTCCGGGG CACCATGTAC CGACGGCTCC
961AGGAGTTCGA TGGGGCAGTG GAGGACTTCC TGAAGGTGCT GGACATGGTG ACCGAGGACC
1021AGGAGGACAT GGTGCGGCAG GCACAGCGCC AGCTGTTGCT GACCTACAAC GACTTTGCCG
1081TGCACTGCTA CAGGCAGGGC GCCTACCAGG AGGGCGTGCT GCTGCTGAAC AAGGCCCTCC
1141GGGACGAGCA GCAGGAGAAA GGACTCTACA TCAACCGAGG CGATTGCTTC TTCCAGCTGG
1201GCAACCTGGC CTTTGCCGAG GCGGACTACC AGCAGGCGCT GGCGCTGAGT CCTCAGGACG
1261AGGGCGCCAA CACGCGCACG GGCCTGCTGC AGGAGAAGAT GGGCTTCTGC GAGCAGAGGC
1321GCAAGCAGTT CCAGAAGGCA GAGAACCACT TCTCCACGGC CATCCGGCAC AACCCCCAGA
1381AGGCCCAGTA CTACCTGTAC CGGGCCAAGA GCCGGCAGCT GCTGCAGAAC ATTTTTGGGG
1441CCCGCCAGGA TGTGGCCACT GTCCTGCTCC TCAACCCCAA GCAACCAAAG CTGTCCCTGC
1501TGATGACCAA CCTCTTCCCG GGCATGTCGG TGGAGGAGGT GCTTAGCACC CAGATAGCCC
1561ACCTGGCCAG GCTGCAGCTG GAGCAGATGG TGGAGGGCAG CCTGCAGGCC GGCAGCCCAC
1621AAGGCATTGT GGGGATGCTT AAGCGGCACG AGTTGGAGCG CCAGAAGGCC TTGGCCCTGC
1681AGCACTCATG GAAGCAGGGG GAGCCTTTGA TTGCGACCTC CGAGGAGCTG AAGGCCACCC
1741CTGAGATTCC GCAGGTAAAA CCGGGAAGCT CAGAGGGAGA GGCTGAGGCC CCTGAGGAGG
1801AGGAAGAAAA GGAGAAGGAG AAAAAAGGGG AGAAAAAATC AGAGCTCATA CCTAGCAAGG
1861TGGCGTCCCT GTCTGACAGC TACCTTGACC AGACCTCTTC AGCCTCCAGC ATGAGCTTCA
1921GGACCACAGG CACCTCAGAG ACTGAGATGT CGGCTATCTG CCAGGAATAC AGGAGCACCT
1981CAGCCACCGC CGTGACATTC TCTGACTCGT CACTGTTGAA GACGCAATCC TCGGACTCTG
2041GGAACAACAG GGAGGCACTA AGCCATGGTC CCAGAAAAAT CAAGGCCACC CAGGGCCAGA
2101GGCAGAGCCT TAGCAAGACT GAGCCCACCC AGAGCCAGAG GCGGAACTCC AGCAAGACCA
2161AGGCCACTAT ACACAAGAGG AACTCCAGCA AGACCAAGGC CACCCAAAGC CAGAGGCGGA
2221ACTCCAGCAA GACCAGGGCC ACCCAGGGCC AGGGGCAGAG CTCCAGCAAG ACTGAGGCCA
2281CTCAGGGCCA GAGGCAGAGC TCCAGCGAGA TTGAGGCCAC CCAGGGCCCA AGGCAGGAGC
2341CCAGCAAGAC CAAGACCACC CGGAGCCCAA GGCAGAGGCC CAGAAAGGTC AAGGCTGCTC
2401GTGGCCGGAG CTGGAGACCC AGCAAGGTTG ATGCCACCCA GGGCCGAAGC AGGGGACTGC
2461TCCGAAGTTC CACCAAGACT GAGGCTTTCT ATGACTCAAA CTGGAGCCTC AGCAAGACTG
2521AGTATGCCCA AGGCCAGGGC CAGAGGTCCA GCAAGGCTGA GGGTGCCCAG GGCAAGAGCC
2581AGGGCATGAG CTCAACTTCC AGCAAGGCCG AGTCCACCTG GGGACCCAGC CCAAGTCTCA
2641GCAAAACTGA GGTTGATCAG GACCTCACCT ACTATGAATC TGTCTGCCCA ACTTTCTTGT
2701ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)

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