Construct: ORF ccsbBroadEn_09720
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016094.1_s300c1, BRDN0000385434
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TTC16 (158248)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 158248 | TTC16 | tetratricopeptide repeat do... | NM_144965.3 | 99.7% | 99.6% | (many diffs) |
| 2 | human | 158248 | TTC16 | tetratricopeptide repeat do... | NM_001317037.2 | 98.2% | 98.1% | (many diffs) |
| 3 | human | 158248 | TTC16 | tetratricopeptide repeat do... | XM_011518283.2 | 94.6% | 94.5% | (many diffs) |
| 4 | human | 158248 | TTC16 | tetratricopeptide repeat do... | XM_011518284.2 | 94.2% | 94.1% | (many diffs) |
| 5 | human | 158248 | TTC16 | tetratricopeptide repeat do... | XM_011518285.2 | 88.9% | 84% | (many diffs) |
| 6 | human | 158248 | TTC16 | tetratricopeptide repeat do... | XR_002956761.1 | 85.4% | (many diffs) | |
| 7 | human | 158248 | TTC16 | tetratricopeptide repeat do... | XM_011518288.2 | 83.4% | 78.5% | (many diffs) |
| 8 | human | 158248 | TTC16 | tetratricopeptide repeat do... | XM_005251733.2 | 79.6% | 79.4% | (many diffs) |
| 9 | human | 158248 | TTC16 | tetratricopeptide repeat do... | XM_006716970.2 | 79.3% | 66.1% | (many diffs) |
| 10 | human | 158248 | TTC16 | tetratricopeptide repeat do... | XM_006716971.2 | 79.3% | 66.1% | (many diffs) |
| 11 | human | 158248 | TTC16 | tetratricopeptide repeat do... | XM_011518289.3 | 79.3% | 66.1% | (many diffs) |
| 12 | human | 158248 | TTC16 | tetratricopeptide repeat do... | XM_011518290.2 | 79.3% | 66.1% | (many diffs) |
| 13 | human | 158248 | TTC16 | tetratricopeptide repeat do... | XM_005251734.2 | 74.9% | 52.3% | (many diffs) |
| 14 | human | 158248 | TTC16 | tetratricopeptide repeat do... | XM_011518291.2 | 73.6% | 42.7% | (many diffs) |
| 15 | human | 158248 | TTC16 | tetratricopeptide repeat do... | XM_011518292.2 | 73.6% | 42.7% | (many diffs) |
| 16 | human | 158248 | TTC16 | tetratricopeptide repeat do... | XM_011518293.2 | 70.5% | 70.4% | (many diffs) |
| 17 | human | 158248 | TTC16 | tetratricopeptide repeat do... | XM_011518294.3 | 68.5% | 66.2% | (many diffs) |
| 18 | human | 158248 | TTC16 | tetratricopeptide repeat do... | XR_929722.2 | 68.5% | (many diffs) | |
| 19 | human | 158248 | TTC16 | tetratricopeptide repeat do... | XM_011518295.2 | 67.7% | 67.6% | (many diffs) |
| 20 | human | 158248 | TTC16 | tetratricopeptide repeat do... | XR_001746193.2 | 64.7% | (many diffs) | |
| 21 | human | 158248 | TTC16 | tetratricopeptide repeat do... | XM_011518297.2 | 54.5% | 54.2% | (many diffs) |
| 22 | human | 158248 | TTC16 | tetratricopeptide repeat do... | XM_011518298.3 | 48.3% | 47.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2685
- ORF length:
- 2619
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC AGATTCGGAC GAGGATGCCC TGAAGGTTGA CCAGGGCCCC TCACGGGACA 121 TCCCAAAGCC ATGGGTGATT CCAGCCCCCA AAGGGATCCT GCAGCACATC TTTGGGACCA 181 GCCACGTGTT CCAAAGCATC TGTGATGTAA AACCAAAGGT CACAGGGTTA ACAGTGCCCC 241 TCAAAGTCAG GGAATACTAC TCCAGAGGCC AGCAGTGCTT GGAGCAGGCA GACTGGGAGA 301 CAGCTGTGCT GCTCTTCTCC CGCGCACTCC ACCTGGACCC ACAGCTGGTG GACTTCTATG 361 CCTTACGGGC TGAGGCCTAC CTCCAGCTCT GTGACTTCTC CTCGGCCGCC CAGAACCTGC 421 GAAGGGCCTA CTCATTACAG CAGGACAACT GCAAGCACCT GGAGCGCCTC ACCTTTGTGC 481 TCTACCTACA GGGACAATGC CTTTTTGAGC AGTGTGCCTT CCTGGATGCC CTGAATGTCT 541 TCTCACATGC TGCTGAGCTC CAGCCTGAGA AACCATGCTT CCGTTACCGA TGCATGGCCT 601 GTCTCCTGGC CCTCAAGCAG CATCAGGCCT GCCTCACGCT CATCACCAAC GAGCTGAAGC 661 AGGACACCAC CAACGCCGAT GTCTACATCT TCCGGGCCAG ACTCTACAAC TTTCTCCAGA 721 AGCCCCACCT CTGCTACCGG GACCTGCACA GCGCCTTGCT GTTGAATCCC AAGCACCCGC 781 AGGCCAGGAT GCTGCTCCAG AAGATGGTGG CCCAGGCCCA GCAGGCGCGC CAAGATGCGG 841 GGATCCTGGC TGTGCAGGGC AAGCTGCAGC ACGCACTGCA GCGGATCAAC CGTGCCATCG 901 AGAACAACCC TCTGGACCCC AGTCTCTTCC TCTTCCGGGG CACCATGTAC CGACGGCTCC 961 AGGAGTTCGA TGGGGCAGTG GAGGACTTCC TGAAGGTGCT GGACATGGTG ACCGAGGACC 1021 AGGAGGACAT GGTGCGGCAG GCACAGCGCC AGCTGTTGCT GACCTACAAC GACTTTGCCG 1081 TGCACTGCTA CAGGCAGGGC GCCTACCAGG AGGGCGTGCT GCTGCTGAAC AAGGCCCTCC 1141 GGGACGAGCA GCAGGAGAAA GGACTCTACA TCAACCGAGG CGATTGCTTC TTCCAGCTGG 1201 GCAACCTGGC CTTTGCCGAG GCGGACTACC AGCAGGCGCT GGCGCTGAGT CCTCAGGACG 1261 AGGGCGCCAA CACGCGCACG GGCCTGCTGC AGGAGAAGAT GGGCTTCTGC GAGCAGAGGC 1321 GCAAGCAGTT CCAGAAGGCA GAGAACCACT TCTCCACGGC CATCCGGCAC AACCCCCAGA 1381 AGGCCCAGTA CTACCTGTAC CGGGCCAAGA GCCGGCAGCT GCTGCAGAAC ATTTTTGGGG 1441 CCCGCCAGGA TGTGGCCACT GTCCTGCTCC TCAACCCCAA GCAACCAAAG CTGTCCCTGC 1501 TGATGACCAA CCTCTTCCCG GGCATGTCGG TGGAGGAGGT GCTTAGCACC CAGATAGCCC 1561 ACCTGGCCAG GCTGCAGCTG GAGCAGATGG TGGAGGGCAG CCTGCAGGCC GGCAGCCCAC 1621 AAGGCATTGT GGGGATGCTT AAGCGGCACG AGTTGGAGCG CCAGAAGGCC TTGGCCCTGC 1681 AGCACTCATG GAAGCAGGGG GAGCCTTTGA TTGCGACCTC CGAGGAGCTG AAGGCCACCC 1741 CTGAGATTCC GCAGGTAAAA CCGGGAAGCT CAGAGGGAGA GGCTGAGGCC CCTGAGGAGG 1801 AGGAAGAAAA GGAGAAGGAG AAAAAAGGGG AGAAAAAATC AGAGCTCATA CCTAGCAAGG 1861 TGGCGTCCCT GTCTGACAGC TACCTTGACC AGACCTCTTC AGCCTCCAGC ATGAGCTTCA 1921 GGACCACAGG CACCTCAGAG ACTGAGATGT CGGCTATCTG CCAGGAATAC AGGAGCACCT 1981 CAGCCACCGC CGTGACATTC TCTGACTCGT CACTGTTGAA GACGCAATCC TCGGACTCTG 2041 GGAACAACAG GGAGGCACTA AGCCATGGTC CCAGAAAAAT CAAGGCCACC CAGGGCCAGA 2101 GGCAGAGCCT TAGCAAGACT GAGCCCACCC AGAGCCAGAG GCGGAACTCC AGCAAGACCA 2161 AGGCCACTAT ACACAAGAGG AACTCCAGCA AGACCAAGGC CACCCAAAGC CAGAGGCGGA 2221 ACTCCAGCAA GACCAGGGCC ACCCAGGGCC AGGGGCAGAG CTCCAGCAAG ACTGAGGCCA 2281 CTCAGGGCCA GAGGCAGAGC TCCAGCGAGA TTGAGGCCAC CCAGGGCCCA AGGCAGGAGC 2341 CCAGCAAGAC CAAGACCACC CGGAGCCCAA GGCAGAGGCC CAGAAAGGTC AAGGCTGCTC 2401 GTGGCCGGAG CTGGAGACCC AGCAAGGTTG ATGCCACCCA GGGCCGAAGC AGGGGACTGC 2461 TCCGAAGTTC CACCAAGACT GAGGCTTTCT ATGACTCAAA CTGGAGCCTC AGCAAGACTG 2521 AGTATGCCCA AGGCCAGGGC CAGAGGTCCA GCAAGGCTGA GGGTGCCCAG GGCAAGAGCC 2581 AGGGCATGAG CTCAACTTCC AGCAAGGCCG AGTCCACCTG GGGACCCAGC CCAAGTCTCA 2641 GCAAAACTGA GGTTGATCAG GACCTCACCT ACTATGAATC TGTCTGCCCA ACTTTCTTGT 2701 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c