Construct: ORF ccsbBroadEn_09722
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008753.1_s300c1, BRDN0000456717
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF782 (158431)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 158431 | ZNF782 | zinc finger protein 782 | NM_001001662.3 | 99.9% | 99.8% | 1819G>T |
| 2 | human | 158431 | ZNF782 | zinc finger protein 782 | NM_001346991.2 | 99.9% | 99.8% | 1819G>T |
| 3 | human | 158431 | ZNF782 | zinc finger protein 782 | XM_011518315.2 | 99.9% | 99.8% | 1819G>T |
| 4 | human | 158431 | ZNF782 | zinc finger protein 782 | XM_011518318.3 | 99.9% | 99.8% | 1819G>T |
| 5 | human | 158431 | ZNF782 | zinc finger protein 782 | XM_011518320.2 | 99% | 98.9% | 12_13insCAGGCATCAGTGTCATTC;1801G>T |
| 6 | human | 158431 | ZNF782 | zinc finger protein 782 | XM_017014343.2 | 99% | 98.9% | 12_13insCAGGCATCAGTGTCATTC;1801G>T |
| 7 | human | 158431 | ZNF782 | zinc finger protein 782 | NM_001346993.2 | 96.5% | 96.4% | 0_1ins72;1747G>T |
| 8 | human | 158431 | ZNF782 | zinc finger protein 782 | NM_001346995.2 | 81% | 80.9% | 0_1ins396;1423G>T |
| 9 | human | 158431 | ZNF782 | zinc finger protein 782 | XM_024447430.1 | 81% | 80.9% | 0_1ins396;1423G>T |
| 10 | human | 158431 | ZNF782 | zinc finger protein 782 | XM_024447431.1 | 81% | 80.9% | 0_1ins396;1423G>T |
| 11 | human | 158431 | ZNF782 | zinc finger protein 782 | XR_001746208.2 | 47.4% | 1_229del;2048G>T;2327_4413del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2166
- ORF length:
- 2097
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAACACATTT CAGGCATCAG TGTCATTCCA GGACGTGACT GTGGAATTCA 121 GCCAGGAGGA GTGGCAGCAC ATGGGCCCTG TTGAGAGGAC CCTGTACAGA GATGTGATGC 181 TGGAGAACTA CAGCCACCTC GTCTCAGTGG GCTACTGCTT TACAAAACCA GAACTGATCT 241 TCACATTGGA ACAAGGAGAA GATCCATGGT TATTAGAGAA AGAGAAAGGA TTTCTAAGCA 301 GGAACTCCCC AGAAGACTCC CAACCTGATG AAATCTCAGA GAAGAGCCCA GAAAATCAAG 361 GCAAACATTT GTTGCAAGTT TTATTCACCA ATAAATTATT GACTACAGAG CAAGAAATTT 421 CAGGAAAACC ACATAATCGA GACATAAACA TTTTTCGTGC AAGAATGATG CCTTGTAAAT 481 GTGACATTGC GGGGTCTGCT TGCCAGGGGC TCAGCCTGAT GGCCCCACAC TGTCAGTATT 541 CAAAAGAAAA GGCTCATGAG CGTAATGTTT GTGACAAATG GCTCATCAGT ATTAAGGATG 601 GCAGAACTAA CACTCAAGAG AAATCTTTCG CTTATAGTAA AATTGTGAAA ACCCTCCATC 661 ATAAGGAGGA AGTTATTCAA CATCAGACAA TTCAGACTCT GGGGCAAGAT TTTGAATATA 721 ATGAAAGTAG AAAAGCTTTT CTTGAAAAGG CTGCCCTTGT TACATCTAAC AGTACCCACC 781 CAAAAGGAAA ATCTTACAAT TTCAATAAAT TTGGGGAAAA CAAATATGAT AAATCAACCT 841 TTATTATTCC TCAGAACATG AATCCAGAGA AGAGTCACTA TGAGTTTAAT GATACTGGAA 901 ATTGTTTCTG TAGAATCACT CACAAAACTC TCACAGGAGG GAAATCCTTC AGCCAAAAGT 961 CACACATTAG AGAACATCAT AGAGTTCATA TAGGGGTGAA ACCCTTTGAA TATGGAAAAA 1021 GTTTCAACCG TAATTCAACC CTCCCAGTGC ATCAGAGAAC TCATGCAACA GATAAATACT 1081 CTGATTATCA CCCATGTACA GAGACATTCA GCTACCAGTC AACTTTCAGT GTACATCAGA 1141 AGGTTCACAT AAGGGCAAAA CCCTATGAGT ATAATGAATG TGGGAAATCC TGCTCTATGA 1201 ATTCACACTT GATTTGGCCT CAGAAAAGTC ACACAGGGGA GAAACCCTAT GAATGTCCTG 1261 AGTGCGGGAA AGCCTTCAGT GAGAAGTCAC GCCTAAGAAA ACATCAGAGA ACTCACACGG 1321 GAGAGAAACC ATACAAATGT GATGGATGTG ATAAAGCTTT CAGTGCAAAG TCAGGCCTAA 1381 GAATACACCA GAGAACCCAC ACAGGGGAGA AACCATTCGA ATGTCATGAA TGTGGGAAAT 1441 CTTTTAACTA TAAGTCAATC CTCATAGTGC ATCAGAGAAC TCACACAGGG GAGAAACCTT 1501 TTGAATGTAA TGAATGCGGG AAATCTTTCA GCCATATGTC AGGCCTAAGG AATCACCGAA 1561 GAACTCACAC AGGGGAAAGA CCATATAAAT GTGATGAATG TGGGAAAGCT TTCAAACTGA 1621 AGTCAGGCCT GAGGAAACAT CATAGAACAC ACACAGGGGA GAAGCCCTAC AAATGTAATC 1681 AGTGTGGAAA AGCTTTCGGT CAGAAATCAC AACTCAGAGG ACATCATAGA ATTCACACAG 1741 GGGAAAAACC CTATAAATGT AATCATTGTG GGGAAGCTTT CAGTCAGAAA TCAAACCTCA 1801 GAGTACATCA CAGAACTCAT ACTGGGGAGA AACCCTATCA ATGTGAGGAG TGTGGAAAAA 1861 CATTCAGGCA GAAATCAAAT CTCAGATGGC ATCAGAGAAC TCACACTGGG GAGAAGCCCT 1921 ATGAATGTAA TGAATGTGGA AAAGCTTTCA GTGAGAAGTC AGTCCTAAGA AAACATCAGC 1981 GAACTCACAC CGGGGAGAAA CCATATAATT GTAATCAGTG TGGGGAAGCT TTCAGTCAGA 2041 AATCCAATCT CAGAGTACAT CAGAGAACTC ACACAGGGGA GAAACCCTAT AAATGTGATA 2101 AATGTGGGAG AACTTTCAGT CAAAAATCAA GCCTTAGAGA ACATCAGAAA GCCCACCCAG 2161 GGGATTTGCC AACTTTCTTG TACAAAGTTG Gcattataag aaagcattgc ttatcaattt 2221 gttgcaacga ac