Construct: ORF ccsbBroadEn_09730
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011263.1_s300c1, BRDN0000387744
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CLEC12A (160364)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 160364 | CLEC12A | C-type lectin domain family... | NM_138337.6 | 99.8% | 99.6% | 730A>C |
| 2 | human | 160364 | CLEC12A | C-type lectin domain family... | XM_005253324.2 | 99.8% | 99.6% | 730A>C |
| 3 | human | 160364 | CLEC12A | C-type lectin domain family... | XM_011520570.1 | 99.8% | 99.6% | 730A>C |
| 4 | human | 160364 | CLEC12A | C-type lectin domain family... | NM_001207010.2 | 96.2% | 96% | 1_30del;760A>C |
| 5 | human | 160364 | CLEC12A | C-type lectin domain family... | XM_006719033.3 | 93.8% | 93.6% | 1_51del;781A>C |
| 6 | human | 160364 | CLEC12A | C-type lectin domain family... | NM_201623.4 | 87.4% | 86.7% | 91_92ins99;631A>C |
| 7 | human | 160364 | CLEC12A | C-type lectin domain family... | XM_011520571.2 | 82.1% | 81.5% | 1_51del;142_143ins99;682A>C |
| 8 | human | 160364 | CLEC12A | C-type lectin domain family... | NM_001300730.2 | 80.3% | 80.3% | 639_640ins156 |
| 9 | human | 160364 | CLEC12A | C-type lectin domain family... | XM_011520573.2 | 75.8% | 75.8% | 1_51del;693_694ins153 |
| 10 | human | 160364 | CLEC12A | C-type lectin domain family... | XM_006719035.3 | 75.8% | 75.5% | 1_51del;693_694delCA;696_697ins152 |
| 11 | human | 160364 | CLEC12A | C-type lectin domain family... | XM_006719036.3 | 75.5% | 75.5% | 1_51del;690_691ins156 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 864
- ORF length:
- 795
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTCTGAAGAA GTTACTTATG CAGATCTTCA ATTCCAGAAC TCCAGTGAGA 121 TGGAAAAAAT CCCAGAAATT GGCAAATTTG GGGAAAAAGC ACCTCCAGCT CCCTCTCATG 181 TATGGCGTCC AGCAGCCTTG TTTCTGACTC TTCTGTGCCT TCTGTTGCTC ATTGGATTGG 241 GAGTCTTGGC AAGCATGTTT CACGTAACTT TGAAGATAGA AATGAAAAAA ATGAACAAAC 301 TACAAAACAT CAGTGAAGAG CTCCAGAGAA ATATTTCTCT ACAACTGATG AGTAACATGA 361 ATATCTCCAA CAAGATCAGG AACCTCTCCA CCACACTGCA AACAATAGCC ACCAAATTAT 421 GTCGTGAGCT ATATAGCAAA GAACAAGAGC ACAAATGTAA GCCTTGTCCA AGGAGATGGA 481 TTTGGCATAA GGACAGCTGT TATTTCCTAA GTGATGATGT CCAAACATGG CAGGAGAGTA 541 AAATGGCCTG TGCTGCTCAG AATGCCAGCC TGTTGAAGAT AAACAACAAA AATGCATTGG 601 AATTTATAAA ATCCCAGAGT AGATCATATG ACTATTGGCT GGGATTATCT CCTGAAGAAG 661 ATTCCACTCG TGGTATGAGA GTGGATAATA TAATCAACTC CTCTGCCTGG GTTATAAGAA 721 ACGCACCTGA CTTAAATAAC ATGTATTGTG GATATATAAA TAGACTATAT GTTCAATATT 781 ATCACTGCAC TTATAAACAA AGAATGATAT GTGAGAAGAT GGCCAATCCA GTGCAGCTTG 841 GTTCTACATA TTTTAGGGAG GCATTGCCAA CTTTCTTGTA CAAAGTtggc attataagaa 901 agcattgctt atcaatttgt tgcaacgaac