Construct: ORF ccsbBroadEn_09738

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018550.1_s300c1, BRDN0000389877
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FSIP1 (161835)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 161835 FSIP1 fibrous sheath interacting ... NM_001324338.2 99.8% 99.6% 1061G>A;1204T>C;1476C>T
2 human 161835 FSIP1 fibrous sheath interacting ... NM_152597.5 99.8% 99.6% 1061G>A;1204T>C;1476C>T
3 human 161835 FSIP1 fibrous sheath interacting ... XM_011521305.3 99.8% 99.6% 1061G>A;1204T>C;1476C>T
4 human 161835 FSIP1 fibrous sheath interacting ... XM_011521306.2 99.8% 99.6% 1061G>A;1204T>C;1476C>T
5 human 161835 FSIP1 fibrous sheath interacting ... XM_011521307.3 70.8% 67.2% (many diffs)
6 human 161835 FSIP1 fibrous sheath interacting ... XM_011521309.3 67.8% 67.9% (many diffs)
7 human 161835 FSIP1 fibrous sheath interacting ... XM_011521311.3 63.6% 63.5% (many diffs)
8 human 161835 FSIP1 fibrous sheath interacting ... XM_017021972.2 63.6% 63.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1809
ORF length:
1743
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA TATTATAAAG GGAAACCTAG ATGGAATTTC AAAACCAGCT TCAAATTCAA
121GAATACGCCC TGGGAGCAGA AGTTCAAATG CTTCTTTGGA GGTGCTCTCA ACAGAACCAG
181GATCCTTCAA GGTCGATACT GCAAGCAACT TGAACTCTGG TAAAGAGGAC CACTCCGAAA
241GCAGTAATAC AGAGAACAGA AGAACTAGTA ATGATGATAA GCAGGAAAGC TGCTCTGAGA
301AAATAAAATT GGCTGAAGAG GGATCAGATG AAGATCTGGA TTTGGTTCAA CATCAGATAA
361TCTCTGAGTG TTCAGATGAA CCCAAATTAA AAGAATTAGA TTCTCAACTT CAAGATGCTA
421TTCAGAAGAT GAAAAAACTT GATAAAATAT TGGCAAAGAA ACAACGCAGA GAAAAAGAAA
481TTAAGAAGCA AGGTCTAGAA ATGAGAATAA AGCTGTGGGA AGAAATTAAG TCTGCAAAAT
541ATAGTGAAGC TTGGCAAAGT AAAGAGGAGA TGGAAAATAC AAAAAAATTT TTATCTTTGA
601CTGCTGTTTC TGAAGAAACT GTTGGTCCTT CTCATGAGGA GGAAGACACC TTTTCCTCAG
661TGTTTCATAC TCAAATCCCT CCAGAAGAAT ATGAAATGCA GATGCAGAAA CTCAATAAAG
721ATTTTACCTG TGATGTGGAA AGAAATGAGT CATTGATCAA ATCAGGAAAG AAACCTTTCT
781CGAATACAGA AAAGATTGAG CTCAGGGGTA AACACAACCA GGATTTTATT AAGAGAAACA
841TTGAGTTGGC CAAGGAATCA AGAAACCCAG TGGTTATGGT TGACAGAGAG AAGAAAAGGC
901TGGTTGAGCT TTTGAAGGAC TTGGATGAGA AAGATTCCGG GCTCTCCAGT TCTGAGGGTG
961ATCAGTCTGG CTGGGTGGTC CCAGTAAAAG GATATGAACT TGCAGTCACC CAGCATCAGC
1021AGCTTGCTGA AATTGATATA AAACTCCAAG AACTCTCTGC AGCCTCCCCT ACAATTTCCA
1081GTTTTTCTCC AAGACTTGAA AATCGGAATA ATCAGAAACC TGACCATGAT GGTGAAAGAA
1141ATATGGAAGT AACTCCAGGA GAAAAGATAC TTAGGAACAC CAAAGAGCAA CGCGATCTGC
1201ATAATCGGCT GAGAGAGATT GATGAAAAGC TGAAAATGAT GAAGGAAAAT GTGTTAGAGT
1261CCACATCACG TCTCTCTGAA GAACAGTTAA AGTGTCTTCT GGATGAATGC ATACTTAAAC
1321AAAAATCCAT CATTAAACTT TCTTCAGAAA GAAAAAAGGA AGACATTGAG GACGTAACAC
1381CTGTGTTCCC CCAGCTTTCC AGGTCCATCA TCTCTAAATT GCTAAATGAA TCAGAAACAA
1441AGGTCCAGAA AACTGAGGTA GAAGATGCAG ATATGCTTGA GAGTGAAGAA TGTGAAGCTT
1501CTAAAGGCTA CTATCTCACT AAAGCCTTGA CTGGACATAA TATGTCAGAA GCTCTTGTCA
1561CTGAAGCAGA GAATATGAAA TGCCTTCAAT TTTCCAAGGA CGTTATTATT AGTGACACAA
1621AAGACTATTT TATGTCGAAG ACTCTTGGCA TTGGGAGACT GAAAAGGCCC TCCTTCTTAG
1681ATGATCCACT GTATGGTATC AGTGTGAGCC TTTCATCAGA AGACCAACAT CTGAAACTCA
1741GTTCTCCAGA GAATACAATA GCAGATGAGC AGGAGACTAA AGATGCAGCA GAAGAATGTA
1801AAGAACCCTA CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt gcttatcaat
1861ttgttgcaac gaac

Download FASTA (ORF) (Full)