Construct: ORF ccsbBroadEn_09772
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012475.1_s300c1, BRDN0000394840
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TXLNB (167838)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 167838 | TXLNB | taxilin beta | NM_153235.4 | 99.8% | 99.7% | 1042G>A;1617G>A;1804G>C |
| 2 | human | 167838 | TXLNB | taxilin beta | XM_005266836.1 | 99.8% | 99.7% | 1042G>A;1617G>A;1804G>C |
| 3 | human | 167838 | TXLNB | taxilin beta | XM_011535505.3 | 99.8% | 99.7% | 1042G>A;1617G>A;1804G>C |
| 4 | human | 167838 | TXLNB | taxilin beta | XM_017010322.2 | 99.8% | 99.7% | 1042G>A;1617G>A;1804G>C |
| 5 | human | 167838 | TXLNB | taxilin beta | XM_024446341.1 | 99.8% | 99.7% | 1042G>A;1617G>A;1804G>C |
| 6 | human | 167838 | TXLNB | taxilin beta | XM_011535506.2 | 78.2% | 78% | (many diffs) |
| 7 | human | 167838 | TXLNB | taxilin beta | XR_942317.3 | 66.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2121
- ORF length:
- 2052
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAGGCTAAT CACTCTGAAC AGCTCTCAGC GGAACGACAG TCAACACCTC 121 CAGGTGACAG TTCATCATTA CCCAGTCACA ATGGCCTGGA GAAGGAAGAT GGCCAGGATT 181 CTCCAACCCC AGTCCAACCA CCAGAGAAAG AGGCAAGTGT GCACCCCGAT ATCTCTGAAG 241 AGCTGAATCG ACAGCTGGAA GACATCATTA ACACTTATGG GTCTGCTGCC AGCACAGCAG 301 GGAAAGAGGG CTCTGCCAGG GCCAGTGAGC AGCCTGAGAA TGCAGAATCA CCTGACAACG 361 AGGATGGGGA CTGTGAGGAA ACAACTGAAG AGGCTGGAAG AGAACCCGTT GCTTCTGGAG 421 AGCCACCCAC TGTCAAAGAG CCCGTCAGCA ATAAGGAGCA AAAATTGGAA AAGAAAATCC 481 TAAAAGGATT AGGCAAAGAA GCCAACCTGC TAATGCAAAA TCTGAACAAG TTGCAAACAC 541 CGGAAGAAAA GTTTGATTTT TTATTCAAGA AGTATGCTGA ATTGCTGGAT GAACATCGTA 601 CTGAGCAAAA GAAGTTAAAG CTCCTCCAAA AGAAACAGGT ACAAATTCAA AAAGAAAAGG 661 ACCAGTTACA AGGTGAACAC AGCAGAGCTA TCCTCGCTCG AAGCAAATTG GAGAGTCTGT 721 GCCGGGAGCT GCAGAGACAC AACAAGACTC TGAAGGAAGA GGCGCTTCAG CGGGCACGTG 781 AGGAAGAAGA GAAAAGGAAG GAAATCACAA GCCATTTCCA GAGTACCCTC ACGGACATCC 841 AGGGCCAGAT CGAGCAGCAG AGTGAGCGAA ATATGAAGCT CTGTCAGGAG AACACAGAGC 901 TTGCAGAAAA GCTGAAAAGC ATCATCGATC AGTATGAGCT CAGAGAGGAG CATCTGGACA 961 AAATATTTAA ACACAGAGAA CTGCAGCAGA AGCTGGTGGA TGCAAAGCTT GAGCAGGCCC 1021 AAGAAATGAT GAAGGAAGCG GAGGAGCGAC ACAAACGAGA AAAGGAATAT TTGCTGAACC 1081 AGGCAGCAGA GTGGAAACTT CAGGCGAAAA TGCTGAAGGA GCAAGAGACA GTCCTGCAGG 1141 CTCAGCTCAC TCTCTACTCA GGAAGGTTTG AAGAATTCCA GAGCACACTA ACTAAAAGCA 1201 ACGAGGTGTT TGCCACGTTC AAACAGGAAA TGGACAAAAC AACTAAGAAA ATGAAGAAGC 1261 TGGAAAAGGA CACAGCCACA TGGAAAGCCC GATTTGAGAA CTGTAACAAA GCTCTGTTGG 1321 ACATGATTGA AGAGAAAGCA CTGAGAGCTA AAGAATATGA GTGCTTTGTG ATGAAAATCG 1381 GGAGGCTAGA GAACCTCTGC CGTGCTTTAC AAGAAGAGAG AAACGAACTC CACAAAAAAA 1441 TCAGAGACGC AGAAATATCT GAAAAGGATG ACCAAAGTCA GCACAACTCC GATGAAGAGC 1501 CAGAGTCAAA CGTCTCTGTG GATCAAGAGA TTGACGCAGA GGAGGTTAAT AGTGTCCAAA 1561 CCGCCGTGAA AAATCTGGCC ACAGCCTTCA TGATAATTCA TCATCCAGAG TCAACCCCGC 1621 ACCAGTCCAA AGAAACCCAA CCCGAAATAG GCAGTTCTCA GGAGAGTGCT GACGCCGCTC 1681 TCAAAGAGCC AGAGCAACCC CCTCTGATCC CTTCACGGGA TTCAGAGAGT CCCCTGCCTC 1741 CCCTAACTCC TCAGGCTGAA GCCGAAGGAG GCAGTGATGC TGAACCTCCC TCCAAGGCCA 1801 GTAATTCTCC TGCCGGGTTG GGAGCAGAAA CCCAATGCGA GGGTCTCCCT GTTGGAGCAC 1861 AGGCTGATCA GCCGTCCTGG AAGCCAGAGG CAGAAGCTTC CGGTCAGGCC CCACAGGCTC 1921 CCACCGAGGC CTCCCTACAG AAGATGGAGG CAGATGTGCC TGCTCCAGCA TGCGCAGCAG 1981 AAGAGCACGT TGCAGCCATG GTGCCTGCAT GCGAGCCCAG TAGGCAGCCC CCACGAGCAG 2041 CAGCAGAGGA GCTGCCAGTA GGGGCCTCAG CTGGGCCCCA GCCGCGCAAC GTGGCTGACA 2101 CCAATCTGGA AGGCGTCGAC TTGCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 2161 attgcttatc aatttgttgc aacgaac