Construct: ORF ccsbBroadEn_09772

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012475.1_s300c1, BRDN0000394840
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TXLNB (167838)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 167838 TXLNB taxilin beta NM_153235.4 99.8% 99.7% 1042G>A;1617G>A;1804G>C
2 human 167838 TXLNB taxilin beta XM_005266836.1 99.8% 99.7% 1042G>A;1617G>A;1804G>C
3 human 167838 TXLNB taxilin beta XM_011535505.3 99.8% 99.7% 1042G>A;1617G>A;1804G>C
4 human 167838 TXLNB taxilin beta XM_017010322.2 99.8% 99.7% 1042G>A;1617G>A;1804G>C
5 human 167838 TXLNB taxilin beta XM_024446341.1 99.8% 99.7% 1042G>A;1617G>A;1804G>C
6 human 167838 TXLNB taxilin beta XM_011535506.2 78.2% 78% (many diffs)
7 human 167838 TXLNB taxilin beta XR_942317.3 66.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2121
ORF length:
2052
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGAGGCTAAT CACTCTGAAC AGCTCTCAGC GGAACGACAG TCAACACCTC
121CAGGTGACAG TTCATCATTA CCCAGTCACA ATGGCCTGGA GAAGGAAGAT GGCCAGGATT
181CTCCAACCCC AGTCCAACCA CCAGAGAAAG AGGCAAGTGT GCACCCCGAT ATCTCTGAAG
241AGCTGAATCG ACAGCTGGAA GACATCATTA ACACTTATGG GTCTGCTGCC AGCACAGCAG
301GGAAAGAGGG CTCTGCCAGG GCCAGTGAGC AGCCTGAGAA TGCAGAATCA CCTGACAACG
361AGGATGGGGA CTGTGAGGAA ACAACTGAAG AGGCTGGAAG AGAACCCGTT GCTTCTGGAG
421AGCCACCCAC TGTCAAAGAG CCCGTCAGCA ATAAGGAGCA AAAATTGGAA AAGAAAATCC
481TAAAAGGATT AGGCAAAGAA GCCAACCTGC TAATGCAAAA TCTGAACAAG TTGCAAACAC
541CGGAAGAAAA GTTTGATTTT TTATTCAAGA AGTATGCTGA ATTGCTGGAT GAACATCGTA
601CTGAGCAAAA GAAGTTAAAG CTCCTCCAAA AGAAACAGGT ACAAATTCAA AAAGAAAAGG
661ACCAGTTACA AGGTGAACAC AGCAGAGCTA TCCTCGCTCG AAGCAAATTG GAGAGTCTGT
721GCCGGGAGCT GCAGAGACAC AACAAGACTC TGAAGGAAGA GGCGCTTCAG CGGGCACGTG
781AGGAAGAAGA GAAAAGGAAG GAAATCACAA GCCATTTCCA GAGTACCCTC ACGGACATCC
841AGGGCCAGAT CGAGCAGCAG AGTGAGCGAA ATATGAAGCT CTGTCAGGAG AACACAGAGC
901TTGCAGAAAA GCTGAAAAGC ATCATCGATC AGTATGAGCT CAGAGAGGAG CATCTGGACA
961AAATATTTAA ACACAGAGAA CTGCAGCAGA AGCTGGTGGA TGCAAAGCTT GAGCAGGCCC
1021AAGAAATGAT GAAGGAAGCG GAGGAGCGAC ACAAACGAGA AAAGGAATAT TTGCTGAACC
1081AGGCAGCAGA GTGGAAACTT CAGGCGAAAA TGCTGAAGGA GCAAGAGACA GTCCTGCAGG
1141CTCAGCTCAC TCTCTACTCA GGAAGGTTTG AAGAATTCCA GAGCACACTA ACTAAAAGCA
1201ACGAGGTGTT TGCCACGTTC AAACAGGAAA TGGACAAAAC AACTAAGAAA ATGAAGAAGC
1261TGGAAAAGGA CACAGCCACA TGGAAAGCCC GATTTGAGAA CTGTAACAAA GCTCTGTTGG
1321ACATGATTGA AGAGAAAGCA CTGAGAGCTA AAGAATATGA GTGCTTTGTG ATGAAAATCG
1381GGAGGCTAGA GAACCTCTGC CGTGCTTTAC AAGAAGAGAG AAACGAACTC CACAAAAAAA
1441TCAGAGACGC AGAAATATCT GAAAAGGATG ACCAAAGTCA GCACAACTCC GATGAAGAGC
1501CAGAGTCAAA CGTCTCTGTG GATCAAGAGA TTGACGCAGA GGAGGTTAAT AGTGTCCAAA
1561CCGCCGTGAA AAATCTGGCC ACAGCCTTCA TGATAATTCA TCATCCAGAG TCAACCCCGC
1621ACCAGTCCAA AGAAACCCAA CCCGAAATAG GCAGTTCTCA GGAGAGTGCT GACGCCGCTC
1681TCAAAGAGCC AGAGCAACCC CCTCTGATCC CTTCACGGGA TTCAGAGAGT CCCCTGCCTC
1741CCCTAACTCC TCAGGCTGAA GCCGAAGGAG GCAGTGATGC TGAACCTCCC TCCAAGGCCA
1801GTAATTCTCC TGCCGGGTTG GGAGCAGAAA CCCAATGCGA GGGTCTCCCT GTTGGAGCAC
1861AGGCTGATCA GCCGTCCTGG AAGCCAGAGG CAGAAGCTTC CGGTCAGGCC CCACAGGCTC
1921CCACCGAGGC CTCCCTACAG AAGATGGAGG CAGATGTGCC TGCTCCAGCA TGCGCAGCAG
1981AAGAGCACGT TGCAGCCATG GTGCCTGCAT GCGAGCCCAG TAGGCAGCCC CCACGAGCAG
2041CAGCAGAGGA GCTGCCAGTA GGGGCCTCAG CTGGGCCCCA GCCGCGCAAC GTGGCTGACA
2101CCAATCTGGA AGGCGTCGAC TTGCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
2161attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)