Construct: ORF ccsbBroadEn_09775
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013142.1_s300c1, BRDN0000386330
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GALNTL5 (168391)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 168391 | GALNTL5 | polypeptide N-acetylgalacto... | NM_145292.4 | 99.9% | 99.7% | 370T>C |
| 2 | human | 168391 | GALNTL5 | polypeptide N-acetylgalacto... | XM_006715862.4 | 99.9% | 99.7% | 370T>C |
| 3 | human | 168391 | GALNTL5 | polypeptide N-acetylgalacto... | XM_017011793.2 | 89.2% | 89.1% | 1_159del;529T>C |
| 4 | human | 168391 | GALNTL5 | polypeptide N-acetylgalacto... | XM_011515849.3 | 83.1% | 80.2% | (many diffs) |
| 5 | human | 168391 | GALNTL5 | polypeptide N-acetylgalacto... | XM_011515852.2 | 73.7% | 70.4% | (many diffs) |
| 6 | human | 168391 | GALNTL5 | polypeptide N-acetylgalacto... | XM_011515853.2 | 73.7% | 70.4% | (many diffs) |
| 7 | human | 168391 | GALNTL5 | polypeptide N-acetylgalacto... | XM_017011794.1 | 72.3% | 72.2% | 0_1ins366;4T>C |
| 8 | human | 168391 | GALNTL5 | polypeptide N-acetylgalacto... | NR_033169.2 | 69.4% | (many diffs) | |
| 9 | human | 168391 | GALNTL5 | polypeptide N-acetylgalacto... | XR_001744572.1 | 42.3% | (many diffs) | |
| 10 | human | 168391 | GALNTL5 | polypeptide N-acetylgalacto... | XM_017011795.1 | 38.5% | 34.9% | (many diffs) |
| 11 | human | 168391 | GALNTL5 | polypeptide N-acetylgalacto... | XM_017011796.1 | 38.1% | 36% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1395
- ORF length:
- 1329
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG AAATGCCATA ATTCAAGGTT TATTCTATGG GTCCTTGACA TTTGGGATCT 121 GGACAGCTCT GTTATTCATA TATTTGCACC ATAATCATGT GAGCAGCTGG CAGAAGAAAA 181 GCCAGGAGCC TCTGTCAGCT TGGTCCCCTG GAAAAAAAGT GCATCAGCAA ATTATCTATG 241 GCTCAGAGCA AATACCAAAA CCTCATGTAA TAGTCAAAAG GACTGATGAA GATAAAGCAA 301 AGTCTATGTT AGGTACAGAT TTTAACCATA CAAACCCAGA ACTTCATAAA GAACTTTTAA 361 AATATGGATT TAATGTGATT ATCAGTAGAA GCTTGGGCAT CGAAAGAGAA GTGCCAGATA 421 CCAGGAGTAA AATGCGTCTT CAAAAACATT ACCCAGCCCG CCTCCCGACT GCCAGCATTG 481 TCATTTGCTT CTATAATGAA GAATGTAATG CCTTGTTTCA GACCATGTCC AGTGTCACGA 541 ACCTCACGCC ACACTATTTT CTTGAAGAAA TTATTTTGGT AGATGACATG AGCAAAGTTG 601 ATGATTTGAA AGAAAAACTA GACTATCACC TGGAAACTTT TCGGGGAAAG GTTAAAATAA 661 TAAGAAACAA AAAGAGAGAG GGGCTGATTC GAGCAAGGCT GATTGGAGCT TCTCATGCTT 721 CAGGGGATGT TCTGGTGTTC CTGGACAGCC ACTGTGAGGT GAACAGAGTA TGGCTGGAGC 781 CCCTGCTGCA TGCCATTGCC AAGGACCCCA AAATGGTGGT GTGCCCCCTG ATAGATGTCA 841 TTGATGATAG AACTCTGGAG TATAAGCCCT CTCCTCTTGT AAGGGGAACT TTTGATTGGA 901 ACCTACAATT TAAATGGGAT AATGTTTTCT CTTATGAGAT GGATGGACCA GAAGGATCTA 961 CTAAACCAAT CCGGTCACCT GCAATGTCTG GAGGAATTTT TGCTATACGT CGGCATTATT 1021 TTAATGAAAT TGGACAGTAT GACAAGGATA TGGATTTTTG GGGAAGAGAA AATTTGGAAC 1081 TTTCACTAAG GATCTGGATG TGTGGAGGCC AACTCTTTAT AATCCCCTGC TCTCGAGTAG 1141 GACATATCAG TAAGAAACAA ACTGGAAAAC CTTCTACAAT CATCAGTGCT ATGACACATA 1201 ACTACCTAAG ACTGGTGCAC GTTTGGCTGG ATGAATATAA GGAGCAGTTT TTTCTTCGAA 1261 AGCCTGGTCT GAAATATGTC ACCTACGGAA ATATTCGCGA GCGTGTTGAG TTAAGGAAAC 1321 GACTGGGTTG CAAGTCATTT CAGTGGTATT TGGATAATGT CTTCCCAGAG TTGGAGGCAT 1381 CTGTGAACAG CCTGTGCCCA ACTTACTTGT ACAAAGTtgg cattataaga aagcattgct 1441 tatcaatttg ttgcaacgaa c