Construct: ORF ccsbBroadEn_09822
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008104.1_s300c1, BRDN0000456475
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RANBP3L (202151)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 202151 | RANBP3L | RAN binding protein 3 like | NM_145000.5 | 99.9% | 99.7% | 209C>G |
| 2 | human | 202151 | RANBP3L | RAN binding protein 3 like | NM_001323277.1 | 96.7% | 96.7% | 209C>G;1355_1358delGTAA;1359_1360ins40 |
| 3 | human | 202151 | RANBP3L | RAN binding protein 3 like | NM_001323278.2 | 95.6% | 95.6% | 187_188ins60 |
| 4 | human | 202151 | RANBP3L | RAN binding protein 3 like | NM_001323275.2 | 95% | 94.8% | (many diffs) |
| 5 | human | 202151 | RANBP3L | RAN binding protein 3 like | NM_001161429.3 | 94.8% | 94.6% | 209C>G;267_341del |
| 6 | human | 202151 | RANBP3L | RAN binding protein 3 like | NM_001323279.2 | 94.7% | 94.6% | 209C>G;266_267ins72 |
| 7 | human | 202151 | RANBP3L | RAN binding protein 3 like | NM_001323273.2 | 92.9% | 91.3% | (many diffs) |
| 8 | human | 202151 | RANBP3L | RAN binding protein 3 like | NM_001323280.1 | 92.5% | 92.6% | 187_188ins60;1295_1298delGTAA;1299_1300ins40 |
| 9 | human | 202151 | RANBP3L | RAN binding protein 3 like | NM_001323276.1 | 91.9% | 91.9% | (many diffs) |
| 10 | human | 202151 | RANBP3L | RAN binding protein 3 like | NM_001323274.1 | 91.8% | 91.8% | (many diffs) |
| 11 | human | 202151 | RANBP3L | RAN binding protein 3 like | XM_006714455.4 | 88.9% | 87.4% | (many diffs) |
| 12 | human | 202151 | RANBP3L | RAN binding protein 3 like | XM_006714453.4 | 88.4% | 86.8% | (many diffs) |
| 13 | human | 202151 | RANBP3L | RAN binding protein 3 like | XM_006714452.4 | 88.4% | 86.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1464
- ORF length:
- 1395
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GACTACCATA CCAAGAAAAG GCAGCAGCCA CCTGCCTGGC AGTTTGCACA 121 CCTGTAAACT GAAGCTGCAG GAGGACCGGC GACAGCAAGA AAAATCTGTC ATTGCTCAAC 181 CCATATTTGT TTTTGAAAAG GGAGAACAAA CTTTTAAGAG ACCTGCAGAA GACACCCTGT 241 ATGAAGCAGC AGAACCAGAA TGTAATGGTT TTCCAAGAAA GCGTGTACGG TCTTCATCTT 301 TTACTTTTCA TATTACAGAT TCTCAGTCCC AGGGAGTGAG GAAAAACAAT GTTTTTATGA 361 CATCAGCTCT TGTGCAAAGT AGTGTTGATA TAAAGAGTGC TGAACAAGGT CCTGTGAAAC 421 ATTCTAAACA TGTTATTAGA CCTGCTATTT TGCAGCTACC TCAAGCTCGA AGTTGTGCAA 481 AAGTAAGAAA AACATTTGGA CACAAGGCAC TGGAATCTTG CAAGACTAAA GAAAAAACAA 541 ATAATAAGAT TTCTGAGGGA AATTCCTATT TGTTAAGTGA AAATTTATCA AGGGCTAGAA 601 TTTCAGTCCA GCTGTCTACT AACCAGGACT TTTTAGGTGC AACATCAGTA GGATGTCAAC 661 CAAATGAAGA TAAATGTTCT TTTAAAAGCT GCAGTTCCAA TTTTGTTTTT GGAGAAAACA 721 TGGTAGAAAG AGTTTTGGGT ACTCAAAAAC TCACCCAGCC TCAACTTGAA AATGATTCAT 781 ATGCCAAGGA AAAACCATTC AAATCCATTC CGAAATTTCC TGTCAACTTT TTAAGTTCAA 841 GAACAGACTC TATTAAAAAT ACTTCCCTAA TTGAATCAGC TGCTGCATTC TCTTCCCAAC 901 CATCACGAAA ATGCTTGCTG GAGAAAATTG ATGTTATAAC AGGGGAGGAA ACAGAACATA 961 ATGTGTTAAA GATAAACTGC AAGCTTTTCA TATTCAACAA AACAACACAA TCCTGGATTG 1021 AAAGGGGCAG AGGAACGTTG AGACTGAATG ACACAGCAAG CACTGACTGT GGAACATTAC 1081 AGTCAAGACT AATTATGCGC AATCAAGGCA GTCTAAGGCT GATCCTCAAC AGCAAACTCT 1141 GGGCCCAAAT GAAGATTCAA AGAGCAAACC ACAAAAATGT ACGAATAACA GCTACTGATT 1201 TAGAAGACTA TAGCATCAAA ATATTTTTAA TTCAGGCCAG TGCCCAAGAT ACAGCATATT 1261 TGTATGCAGC AATACATCAT CGTCTTGTTG CACTTCAAAG CTTCAATAAG CAGAGAGATG 1321 TCAATCAAGC TGAAAGCCTG TCAGAAACAG CCCAACAATT GAACTGCGAA AGCTGTGATG 1381 AGAATGAGGA TGATTTCATC CAAGTCACTA AAAATGGATC AGATCCTTCT AGTTGGACTC 1441 ACAGACAGTC GGTTGCCTGT TCATTGCCAA CTTTCTTGTA CAAAGTTGGc attataagaa 1501 agcattgctt atcaatttgt tgcaacgaac