Construct: ORF ccsbBroadEn_09822

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008104.1_s300c1, BRDN0000456475
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RANBP3L (202151)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 202151 RANBP3L RAN binding protein 3 like NM_145000.5 99.9% 99.7% 209C>G
2 human 202151 RANBP3L RAN binding protein 3 like NM_001323277.1 96.7% 96.7% 209C>G;1355_1358delGTAA;1359_1360ins40
3 human 202151 RANBP3L RAN binding protein 3 like NM_001323278.2 95.6% 95.6% 187_188ins60
4 human 202151 RANBP3L RAN binding protein 3 like NM_001323275.2 95% 94.8% (many diffs)
5 human 202151 RANBP3L RAN binding protein 3 like NM_001161429.3 94.8% 94.6% 209C>G;267_341del
6 human 202151 RANBP3L RAN binding protein 3 like NM_001323279.2 94.7% 94.6% 209C>G;266_267ins72
7 human 202151 RANBP3L RAN binding protein 3 like NM_001323273.2 92.9% 91.3% (many diffs)
8 human 202151 RANBP3L RAN binding protein 3 like NM_001323280.1 92.5% 92.6% 187_188ins60;1295_1298delGTAA;1299_1300ins40
9 human 202151 RANBP3L RAN binding protein 3 like NM_001323276.1 91.9% 91.9% (many diffs)
10 human 202151 RANBP3L RAN binding protein 3 like NM_001323274.1 91.8% 91.8% (many diffs)
11 human 202151 RANBP3L RAN binding protein 3 like XM_006714455.4 88.9% 87.4% (many diffs)
12 human 202151 RANBP3L RAN binding protein 3 like XM_006714453.4 88.4% 86.8% (many diffs)
13 human 202151 RANBP3L RAN binding protein 3 like XM_006714452.4 88.4% 86.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1464
ORF length:
1395
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GACTACCATA CCAAGAAAAG GCAGCAGCCA CCTGCCTGGC AGTTTGCACA
121CCTGTAAACT GAAGCTGCAG GAGGACCGGC GACAGCAAGA AAAATCTGTC ATTGCTCAAC
181CCATATTTGT TTTTGAAAAG GGAGAACAAA CTTTTAAGAG ACCTGCAGAA GACACCCTGT
241ATGAAGCAGC AGAACCAGAA TGTAATGGTT TTCCAAGAAA GCGTGTACGG TCTTCATCTT
301TTACTTTTCA TATTACAGAT TCTCAGTCCC AGGGAGTGAG GAAAAACAAT GTTTTTATGA
361CATCAGCTCT TGTGCAAAGT AGTGTTGATA TAAAGAGTGC TGAACAAGGT CCTGTGAAAC
421ATTCTAAACA TGTTATTAGA CCTGCTATTT TGCAGCTACC TCAAGCTCGA AGTTGTGCAA
481AAGTAAGAAA AACATTTGGA CACAAGGCAC TGGAATCTTG CAAGACTAAA GAAAAAACAA
541ATAATAAGAT TTCTGAGGGA AATTCCTATT TGTTAAGTGA AAATTTATCA AGGGCTAGAA
601TTTCAGTCCA GCTGTCTACT AACCAGGACT TTTTAGGTGC AACATCAGTA GGATGTCAAC
661CAAATGAAGA TAAATGTTCT TTTAAAAGCT GCAGTTCCAA TTTTGTTTTT GGAGAAAACA
721TGGTAGAAAG AGTTTTGGGT ACTCAAAAAC TCACCCAGCC TCAACTTGAA AATGATTCAT
781ATGCCAAGGA AAAACCATTC AAATCCATTC CGAAATTTCC TGTCAACTTT TTAAGTTCAA
841GAACAGACTC TATTAAAAAT ACTTCCCTAA TTGAATCAGC TGCTGCATTC TCTTCCCAAC
901CATCACGAAA ATGCTTGCTG GAGAAAATTG ATGTTATAAC AGGGGAGGAA ACAGAACATA
961ATGTGTTAAA GATAAACTGC AAGCTTTTCA TATTCAACAA AACAACACAA TCCTGGATTG
1021AAAGGGGCAG AGGAACGTTG AGACTGAATG ACACAGCAAG CACTGACTGT GGAACATTAC
1081AGTCAAGACT AATTATGCGC AATCAAGGCA GTCTAAGGCT GATCCTCAAC AGCAAACTCT
1141GGGCCCAAAT GAAGATTCAA AGAGCAAACC ACAAAAATGT ACGAATAACA GCTACTGATT
1201TAGAAGACTA TAGCATCAAA ATATTTTTAA TTCAGGCCAG TGCCCAAGAT ACAGCATATT
1261TGTATGCAGC AATACATCAT CGTCTTGTTG CACTTCAAAG CTTCAATAAG CAGAGAGATG
1321TCAATCAAGC TGAAAGCCTG TCAGAAACAG CCCAACAATT GAACTGCGAA AGCTGTGATG
1381AGAATGAGGA TGATTTCATC CAAGTCACTA AAAATGGATC AGATCCTTCT AGTTGGACTC
1441ACAGACAGTC GGTTGCCTGT TCATTGCCAA CTTTCTTGTA CAAAGTTGGc attataagaa
1501agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)