Construct: ORF ccsbBroadEn_09841
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009433.1_s300c1, BRDN0000386883
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CABCOCO1 (219621)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 219621 | CABCOCO1 | ciliary associated calcium ... | NM_001366905.1 | 99.8% | 100% | 489T>C |
| 2 | human | 219621 | CABCOCO1 | ciliary associated calcium ... | NM_173554.2 | 99.8% | 100% | 489T>C |
| 3 | human | 219621 | CABCOCO1 | ciliary associated calcium ... | NM_001366908.1 | 83% | 83.2% | 1_126del;615T>C |
| 4 | human | 219621 | CABCOCO1 | ciliary associated calcium ... | XM_005269598.3 | 83% | 83.2% | 1_126del;615T>C |
| 5 | human | 219621 | CABCOCO1 | ciliary associated calcium ... | NM_001366906.1 | 70.1% | 70.2% | 1_264del;753T>C |
| 6 | human | 219621 | CABCOCO1 | ciliary associated calcium ... | NM_001366909.1 | 49.3% | 46.1% | (many diffs) |
| 7 | human | 219621 | CABCOCO1 | ciliary associated calcium ... | NM_001366907.1 | 34.7% | 32.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 690
- ORF length:
- 624
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA TTTCTCTATT ATTCAGTATT CAAAATTTAT GACTTTACTA GCTATGTCAC 121 TTCAAAATCT TAAAACACTA CATATGTCCT TAGAGGAAAG CATAAAATGG CTTGGAGAAG 181 TTATGGCTGA AATAGGACCA ACACATTCGC AAAAGAGTGA GGACTGGAAT ATCTTTGATG 241 TAAAACAAGC CAATGCTATC ATTGATTACT TAAAAATCAG CTTATTTCAA CACTACAAGC 301 TATACGAGTT TATGTTCTAC TCTGCCAGGG AAGAAATTGT GATAGGAACT GAGCAAGTGA 361 TAGAGGTTGT CAAGTCTGCA TGTGGCCCTT TCCCAAATCC TCTGGAAGAA GGAATCTCAT 421 TTGATATTTA TTCAACATTC ATAGAGCCCC CCACAATATT GGATACGGAA ATGAAGAGGT 481 TGGATCAAGA ACAAGGCCCT GAGGAGTCTC AGCCAGAAAC TGACACCTCA GACATGGATC 541 CTTTAGTTGG TTTCACCATT GAAGATGTAA AATCAGTGCT GGATCAAGTC ACAGATGACA 601 TTTTAATCGG CATTCAGACC GAGATAAACG AAAAACTGCA AATACAGGAA GAGGCCTTTA 661 ATGCACGAAT AGAAAAATTG AAAAAGGCCT ACCCAACTTT CTTGTACAAA GTtggcatta 721 taagaaagca ttgcttatca atttgttgca acgaac