Construct: ORF ccsbBroadEn_10063
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001943.1_s300c1, BRDN0000387840
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BPIFB3 (359710)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 359710 | BPIFB3 | BPI fold containing family ... | NM_182658.2 | 99.8% | 99.5% | 869C>T;1345C>T |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1497
- ORF length:
- 1428
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCAGCCAGTC ATGCTGGCCC TGTGGTCCCT GCTTCTGCTC TGGGGCCTGG 121 CGACTCCATG CCAGGAGCTG CTAGAGACGG TGGGCACGCT CGCTCGGATT GACAAGGATG 181 AACTCGGCAA AGCCATCCAG AACTCACTGG TTGGGGAGCC CATTCTGCAG AATGTGCTGG 241 GATCGGTCAC AGCTGTGAAC CGGGGCCTCT TGGGCTCAGG AGGGCTGCTT GGAGGAGGCG 301 GCTTGCTGGG CCACGGAGGG GTTTTTGGCG TTGTCGAGGA GCTCTCTGGT CTGAAGATTG 361 AGGAGCTCAC GCTGCCAAAG GTGTTGCTGA AGCTGCTGCC GGGATTTGGG GTGCAGCTGA 421 GCCTGCACAC CAAAGTGGGC ATGCATTGCT CTGGCCCCCT TGGTGGCCTT CTGCAGCTGG 481 CTGCGGAGGT GAACGTGACA TCGCGGGTGG CGCTGGCCGT GAGCTCAAGG GGCACACCCA 541 TCCTTATCCT CAAGCGCTGC AGCACGCTCC TGGGCCACAT CAGCCTGTTC TCAGGGCTGC 601 TGCCCACACC ACTCTTTGGG GTCGTGGAAC AGATGCTCTT CAAGGTGCTT CCGGGACTGC 661 TGTGCCCCGT GGTGGACAGT GTGCTGGGTG TGGTGAATGA GCTCCTGGGG GCTGTGCTGG 721 GCCTGGTGTC CCTTGGGGCT CTTGGGTCCG TGGAATTCTC TCTGGCCACA TTGCCTCTCA 781 TCTCCAACCA GTACATAGAA CTGGACATCA ACCCTATCGT GAAGAGTGTA GCTGGTGATA 841 TCATTGACTT CCCCAAGTCC CGTGCCCCAG CCAAGGTGCC CCCCAAGAAG GACCACACAT 901 CCCAGGTGAT GGTGCCACTG TACCTCTTCA ACACCATGTT TGGACTCCTG CAGACCAACG 961 GCGCCCTCGA CATGGACATC ACCCCTGAGC TGGTTCCCAG CGATGTCCCA CTGACAACTA 1021 CAGACCTGGC AGCTTTGCTC CCTGAGGCCC TGGGGAAGCT GCCCCTGCAC CAGCAACTCC 1081 TACTGTTCCT GCGGGTGAGG GAAGCTCCCA CGGTCACACT CCACAACAAG AAGGCCTTGG 1141 TCTCCCTCCC AGCCAACATC CATGTGCTGT TCTATGTCCC TAAGGGGACC CCTGAATCCC 1201 TCTTTGAGCT GAACTCCGTC ATGACTGTGC GTGCCCAGCT GGCTCCCTCG GCTACCAAGC 1261 TGCACATCTC CCTGTCCCTG GAACGGCTCA GTGTCAAGGT GGCCTCCTCC TTTACCCATG 1321 CCTTTGACGG ATCGCGTTTA GAAGAATGGC TCAGCCATGT GGTCGGGGCA GTGTATGCAC 1381 CAAAGCTTAA CGTGGCCCTG GATGTTGGAA TTTCCCTGCC TAAGGTTCTT AATATCAATT 1441 TTTCCAATTC AGTTCTGGAG ATCGTAGAGA ATGCTGTTGT GCTGACCGTG GCATCCTTGC 1501 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 1561 aac