Construct: ORF ccsbBroadEn_10076
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013277.1_s300c1, BRDN0000391426
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ENTPD8 (377841)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 377841 | ENTPD8 | ectonucleoside triphosphate... | NM_198585.3 | 99.8% | 99.7% | 185T>C;783A>G |
| 2 | human | 377841 | ENTPD8 | ectonucleoside triphosphate... | NM_001033113.2 | 92.3% | 92.3% | 185T>C;783A>G;1051_1161del |
| 3 | human | 377841 | ENTPD8 | ectonucleoside triphosphate... | XM_011518666.2 | 80.8% | 80.7% | 1_324del;509T>C;1107A>G |
| 4 | human | 377841 | ENTPD8 | ectonucleoside triphosphate... | XM_011518665.2 | 75.8% | 75.7% | (many diffs) |
| 5 | human | 377841 | ENTPD8 | ectonucleoside triphosphate... | XM_011518668.1 | 66.8% | 66.8% | 0_1ins381;402A>G;670_780del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1443
- ORF length:
- 1374
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGGGCTGTCC CGGAAGGAGC AGGTCTTCTT GGCCCTGCTG GGGGCCTCGG 121 GGGTCTCAGG CCTCACGGCA CTCATTCTCC TCCTGGTGGA GGCCACCAGC GTGCTCCTGC 181 CCACAGACAT CAAGTTTGGG ATCGTGTTTG ATGCGGGCTC CTCCCACACG TCCCTCTTCC 241 TGTATCAGTG GCCGGCGAAC AAGGAGAATG GCACGGGTGT GGTCAGCCAG GCCCTGGCCT 301 GCCAGGTGGA AGGGCCTGGA ATCTCCTCCT ACACTTCTAA TGCTGCACAG GCTGGTGAGA 361 GCCTGCAGGG CTGCTTGGAG GAGGCGCTGG TGCTGATCCC AGAGGCCCAG CATCGGAAAA 421 CACCCACGTT CCTGGGGGCC ACGGCTGGCA TGAGGTTGCT CAGCCGGAAG AACAGCTCTC 481 AGGCCAGGGA CATCTTTGCA GCAGTCACCC AGGTCCTGGG CCGGTCTCCC GTGGACTTTT 541 GGGGTGCCGA GCTCCTGGCC GGGCAGGCCG AAGGTGCCTT TGGTTGGATC ACTGTCAACT 601 ACGGCTTGGG GACGCTGGTC AAGTACTCCT TCACTGGAGA ATGGATCCAG CCTCCGGAGG 661 AGATGCTGGT GGGTGCCCTG GACATGGGAG GGGCCTCCAC CCAGATCACG TTCGTGCCTG 721 GGGGCCCCAT CTTGGACAAG AGCACCCAGG CCGATTTTCG CCTCTACGGC TCCGACTACA 781 GCGTCTACAC TCACAGCTAC CTGTGCTTTG GACGGGACCA GATGCTGAGC AGGCTCCTCG 841 TGGGGCTGGT GCAGAGCCGC CCGGCTGCCC TGCTCCGTCA CCCGTGCTAC CTCAGCGGCT 901 ACCAGACCAC ACTGGCCCTG GGCCCGCTGT ATGAGTCACC CTGTGTCCAC GCCACGCCCC 961 CGCTGAGCCT CCCCCAGAAC CTCACAGTTG AAGGGACAGG CAACCCTGGA GCCTGCGTCT 1021 CAGCCATCCG GGAACTTTTC AACTTCTCCA GCTGCCAGGG CCAGGAGGAC TGCGCCTTTG 1081 ACGGGGTCTA CCAGCCCCCG CTGCGGGGCC AGTTCTATGT GGAGGCCAGC TACCCTGGGC 1141 AGGACCGCTG GCTGCGGGAC TACTGTGCCT CAGGCCTGTA CATCCTCACC CTCCTGCACG 1201 AGGGCTACGG GTTCAGCGAG GAGACCTGGC CCAGCCTCGA GTTCCGAAAG CAGGCGGGCG 1261 GTGTGGACAT TGGCTGGACA CTGGGCTACA TGCTGAACCT GACCGGGATG ATCCCGGCCG 1321 ATGCGCCGGC TCAGTGGCGG GCAGAGAGCT ACGGCGTCTG GGTGGCCAAA GTGGTGTTCA 1381 TGGTGCTGGC CCTGGTGGCG GTGGTGGGGG CTGCCTTGGT CCAGCTCTTC TGGTTGCAGG 1441 ACTTGCCAAC TTTCATGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 1501 gcaacgaac