Construct: ORF ccsbBroadEn_10098
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007589.1_s300c1, BRDN0000455830
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OR6B2 (389090)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 389090 | OR6B2 | olfactory receptor family 6... | NM_001005853.1 | 99.8% | 100% | 919T>C |
| 2 | human | 150681 | OR6B3 | olfactory receptor family 6... | NM_173351.1 | 90.3% | 89.1% | (many diffs) |
| 3 | human | 150681 | OR6B3 | olfactory receptor family 6... | XM_011510671.2 | 68.3% | 67.3% | (many diffs) |
| 4 | mouse | 259040 | Olfr1416 | olfactory receptor 1416 | NM_147038.1 | 86.2% | 85.8% | (many diffs) |
| 5 | mouse | 259041 | Olfr1414 | olfactory receptor 1414 | NM_147039.2 | 85.5% | 86.8% | (many diffs) |
| 6 | mouse | 258228 | Olfr1415 | olfactory receptor 1415 | NM_001011525.1 | 85.3% | 85.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1005
- ORF length:
- 936
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAGTGGGGAG AATGTCACCA AGGTCAGCAC CTTCATCCTG GTGGGCCTCC 121 CCACGGCCCC AGGGCTGCAG TACCTGCTCT TCCTCCTCTT CCTGCTCACC TACCTCTTTG 181 TCCTGGTGGA GAACCTGGCC ATCATCCTCA TCGTCTGGAG CAGCACCTCC CTCCACAGGC 241 CCATGTACTA CTTTCTGAGC TCCATGTCTT TCCTGGAGAT CTGGTACGTG TCTGACATCA 301 CCCCCAAGAT GCTGGAGGGC TTCCTCCTCC AGCAGAAACG CATCTCTTTC GTCGGGTGCA 361 TGACGCAGCT CTACTTCTTC AGCTCCCTGG TGTGCACCGA GTGTGTGCTT CTGGCCTCCA 421 TGGCCTACGA CCGCTACGTG GCCATCTGCC ACCCGCTGCG CTACCACGTC CTTGTGACCC 481 CGGGGCTGTG CCTCCAGCTG GTGGGCTTCT CCTTTGTGAG TGGCTTCACC ATCTCCATGA 541 TCAAGGTCTG TTTTATCTCC AGCGTCACGT TCTGTGGCTC CAACGTCTTG AACCACTTCT 601 TCTGTGACAT TTCCCCCATC CTCAAGCTGG CCTGCACGGA CTTCTCCACT GCAGAGCTGG 661 TGGATTTCAT CCTGGCCTTC ATCATCCTGG TGTTTCCGCT CCTGGCCACC ATACTGTCAT 721 ATTGGCACAT CACCCTGGCT GTCCTGCGCA TCCCCTCGGC CACCGGCTGC TGGAGAGCCT 781 TCTCTACCTG CGCCTCTCAC CTCACCGTGG TCACCGTCTT CTATACAGCC TTGCTTTTCA 841 TGTATGTCCG GCCCCAAGCC ATTGATTCCC AGAGCTCCAA CAAGCTCATC TCTGCCGTGT 901 ACACTGTTGT CACGCCAATA ATTAACCCTT TGATTTACTG CCTGAGGAAC AAGGAATTTA 961 AGGACGCCTT GAAAAAGGCC TTGGGCCTGG GTCAAACTTC ACACTTGCCA ACTTTCTTGT 1021 ACAAAGTTGG cattataaga aagcattgct tatcaatttg ttgcaacgaa c