Construct: ORF ccsbBroadEn_10110
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004707.1_s300c1, BRDN0000455910
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OR2G6 (391211)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 391211 | OR2G6 | olfactory receptor family 2... | NM_001013355.1 | 99.8% | 100% | 306T>C |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1017
- ORF length:
- 948
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAGGAAACC AACAACAGCT CTGAAAAGGG ATTTCTTCTC CTGGGATTTT 121 CAGATCAGCC TCAGCTAGAG AGGTTTCTTT TTGCCATCAT TTTGTACTTC TACGTCTTGA 181 GCCTTCTGGG GAACACTGCC CTCATACTAG TATGTTGTCT GGACTCCAGA CTCCACACTC 241 CAATGTACTT CTTCCTCAGC AACCTCTCGT GTGTGGACAT CTGCTTTACC ACCAGTGTTG 301 CCCCACAGTT GCTGGTTACC ATGAATAAGA AAGACAAAAC CATGAGCTAC GGTGGCTGTG 361 TGGCCCAGCT CTACGTGGCC ATGGGGTTGG GCTCGTCTGA GTGTATTCTC TTGGCCGTCA 421 TGGCTTATGA CCGCTATGCT GCTGTCTGCC GGCCACTGCG CTACATAGCC ATTATGCACC 481 CCAGGTTCTG TGCGTCTCTG GCCGGTGGAG CATGGCTCAG CGGCCTCATC ACCTCCCTAA 541 TTCAGTGCTC CCTCACTGTG CAGCTGCCCC TCTGTGGTCA TCGCACACTG GATCATATTT 601 TCTGTGAGGT GCCAGTGCTC ATCAAACTGG CCTGTGTGGA TACGACTTTC AACGAGGCAG 661 AACTCTTTGT GGCCAGTGTA GTCTTTCTAA TTGTCCCGGT GTTACTCATC TTAGTCTCCT 721 ATGGCTTTAT CACTCAAGCT GTGTTAAGGA TAAAATCAGC TGCGGGCCGC CAAAAGGCCT 781 TTGGGACCTG TTCGTCTCAC CTGGTTGTGG TCATCATTTT CTATGGGACC ATCATATTCA 841 TGTACCTTCA ACCGGCCAAT AGGAGATCCA AAAACCAGGG AAAGTTTGTT TCTCTTTTCT 901 ATACCATAGT CACCCCACTT TTAAACCCCA TTATCTACAC TCTGAGAAAC AAAGATGTGA 961 AAGGGGCCTT GAGGACCCTG ATACTGGGTA GTGCTGCTGG ACAAAGCCAC AAGGACTTGC 1021 CAACTTTCTT GTACAAAGTT GGcattataa gaaagcattg cttatcaatt tgttgcaacg 1081 aac