Construct: ORF ccsbBroadEn_10206

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002991.1_s300c1, BRDN0000395973
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CCT3 (7203)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7203 CCT3 chaperonin containing TCP1 ... NM_005998.5 99.8% 99.8% 1_3delATG
2 human 7203 CCT3 chaperonin containing TCP1 ... NM_001008800.2 92.8% 92.8% 1_3delATG;91_92ins114
3 human 7203 CCT3 chaperonin containing TCP1 ... NR_036565.1 73.5% 1_234del;263_375del;1980_2220del
4 human 7203 CCT3 chaperonin containing TCP1 ... NR_036564.1 71.9% 1_234del;263_424del;2029_2269del
5 mouse 12462 Cct3 chaperonin containing Tcp1,... NM_009836.1 89.6% 97% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1698
ORF length:
1632
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG CCATCGTCCA GTGCTCGTGC TCAGCCAGAA CACAAAGCGT GAATCCGGAA
121GAAAAGTTCA ATCTGGAAAC ATCAATGCTG CCAAGACTAT TGCAGATATC ATCCGAACAT
181GTTTGGGACC CAAGTCCATG ATGAAGATGC TTTTGGACCC AATGGGAGGC ATTGTGATGA
241CCAATGATGG CAATGCCATT CTTCGAGAGA TTCAAGTCCA GCATCCAGCG GCCAAGTCCA
301TGATCGAAAT TAGCCGGACC CAGGATGAAG AGGTTGGAGA TGGGACCACA TCAGTAATTA
361TTCTTGCAGG GGAAATGCTG TCTGTAGCTG AGCACTTCCT GGAGCAGCAG ATGCACCCAA
421CAGTGGTGAT CAGTGCTTAC CGCAAGGCAT TGGATGATAT GATCAGCACC CTAAAGAAAA
481TAAGTATCCC AGTCGACATC AGTGACAGTG ATATGATGCT GAACATCATC AACAGCTCTA
541TTACTACCAA AGCCATCAGT CGGTGGTCAT CTTTGGCTTG CAACATTGCC CTGGATGCTG
601TCAAGATGGT ACAGTTTGAG GAGAATGGTC GGAAAGAGAT TGACATAAAA AAATATGCAA
661GAGTGGAAAA GATACCTGGA GGCATCATTG AAGACTCCTG TGTCTTGCGT GGAGTCATGA
721TTAACAAGGA TGTGACCCAT CCACGTATGC GGCGCTATAT CAAGAACCCT CGCATTGTGC
781TGCTGGATTC TTCTCTGGAA TACAAGAAAG GAGAAAGCCA GACTGACATT GAGATTACAC
841GAGAGGAGGA CTTCACCCGA ATTCTCCAGA TGGAGGAAGA GTACATCCAG CAGCTCTGTG
901AGGACATTAT CCAACTGAAG CCCGATGTGG TCATCACTGA AAAGGGCATC TCAGATTTAG
961CTCAGCACTA CCTTATGCGG GCCAATATCA CAGCCATCCG CAGAGTCCGG AAGACAGACA
1021ATAATCGCAT TGCTAGAGCC TGTGGGGCCC GGATAGTCAG CCGACCAGAG GAACTGAGAG
1081AAGATGATGT TGGAACAGGA GCAGGCCTGT TGGAAATCAA GAAAATTGGA GATGAATACT
1141TTACTTTCAT CACTGACTGC AAAGACCCCA AGGCCTGCAC CATTCTCCTC CGGGGGGCTA
1201GCAAAGAGAT TCTCTCGGAA GTAGAACGCA ACCTCCAGGA TGCCATGCAA GTGTGTCGCA
1261ATGTTCTCCT GGACCCTCAG CTGGTGCCAG GGGGTGGGGC CTCCGAGATG GCTGTGGCCC
1321ATGCCTTGAC AGAAAAATCC AAGGCCATGA CTGGTGTGGA ACAATGGCCA TACAGGGCTG
1381TTGCCCAGGC CCTAGAGGTC ATTCCTCGTA CCCTGATCCA GAACTGTGGG GCCAGCACCA
1441TCCGTCTACT TACCTCCCTT CGGGCCAAGC ACACCCAGGA GAACTGTGAG ACCTGGGGTG
1501TAAATGGTGA GACGGGTACT TTGGTGGACA TGAAGGAACT GGGCATATGG GAGCCATTGG
1561CTGTGAAGCT GCAGACTTAT AAGACAGCAG TGGAGACGGC AGTTCTGCTA CTGCGAATTG
1621ATGACATCGT TTCAGGCCAC AAAAAGAAAG GCGATGACCA GAGCCGGCAA GGCGGGGCTC
1681CTGATGCTGG CCAGGAGTGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
1741gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)