Construct: ORF ccsbBroadEn_10218

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015274.1_s300c1, BRDN0000387763
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SH3D19 (152503)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 152503 SH3D19 SH3 domain containing 19 NM_001128923.2 99.6% 99.6% 1_9delATGAACATT
2 human 152503 SH3D19 SH3 domain containing 19 NM_001243349.2 99.6% 99.6% 1_9delATGAACATT
3 human 152503 SH3D19 SH3 domain containing 19 XM_017007782.1 99.6% 99.6% 1_9delATGAACATT
4 human 152503 SH3D19 SH3 domain containing 19 XM_017007783.2 99.6% 99.6% 1_9delATGAACATT
5 human 152503 SH3D19 SH3 domain containing 19 XM_024453903.1 99.6% 99.6% 1_9delATGAACATT
6 human 152503 SH3D19 SH3 domain containing 19 XM_024453905.1 99.6% 99.6% 1_9delATGAACATT
7 human 152503 SH3D19 SH3 domain containing 19 NM_001009555.3 96.7% 96.7% 1_9delATGAACATT;1242_1310del
8 human 152503 SH3D19 SH3 domain containing 19 XM_005262767.3 96.7% 96.7% 1_9delATGAACATT;1242_1310del
9 human 152503 SH3D19 SH3 domain containing 19 XM_011531646.2 96.7% 96.7% 1_9delATGAACATT;1242_1310del
10 human 152503 SH3D19 SH3 domain containing 19 XM_017007781.1 96.7% 96.7% 1_9delATGAACATT;1242_1310del
11 human 152503 SH3D19 SH3 domain containing 19 XM_024453901.1 96.7% 96.7% 1_9delATGAACATT;1242_1310del
12 human 152503 SH3D19 SH3 domain containing 19 XM_024453906.1 96.7% 96.7% 1_9delATGAACATT;1242_1310del
13 human 152503 SH3D19 SH3 domain containing 19 NM_001128924.1 94.9% 94.7% 1_9delATGAACATT;694_695ins108
14 human 152503 SH3D19 SH3 domain containing 19 XM_017007779.2 94.9% 94.7% 1_9delATGAACATT;694_695ins108
15 human 152503 SH3D19 SH3 domain containing 19 XM_017007780.1 77.3% 77.3% 1_672del
16 human 152503 SH3D19 SH3 domain containing 19 XM_017007778.1 75.5% 75.5% 1_672del;1905_1973del
17 human 152503 SH3D19 SH3 domain containing 19 XM_011531648.1 75.3% 75.3% 1_681del;1914_1982del
18 human 152503 SH3D19 SH3 domain containing 19 XM_024453904.1 75.3% 75.3% 1_681del;1914_1982del
19 human 152503 SH3D19 SH3 domain containing 19 XM_024453902.1 72.7% 72.7% 1_858del
20 human 152503 SH3D19 SH3 domain containing 19 XM_024453900.1 71.2% 71.2% 1_858del;2091_2159del
21 human 152503 SH3D19 SH3 domain containing 19 XM_011531649.2 69.3% 69.2% 1_858del;1543_1544ins108
22 human 152503 SH3D19 SH3 domain containing 19 XM_011531647.2 67.8% 67.7% 1_858del;1543_1544ins108;1983_2051del
23 human 152503 SH3D19 SH3 domain containing 19 XM_024453907.1 22.8% 22.2% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2361
ORF length:
2292
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAACACAGAA CAAAGCCAAA ATAGTATTGT TTCCAGAATT AAAGTGTTTG
121AGGGTCAGAC AAACATAGAA ACCTCAGGAC TGCCCAAGAA ACCAGAAATT ACTCCACGTT
181CACTTCCTCC AAAGCCTACT GTTTCCTCAG GGAAACCTTC TGTAGCTCCC AAACCAGCTG
241CTAACAGAGC TTCTGGAGAG TGGGACTCTG GGACTGAGAA CAGACTCAAG GTGACCTCCA
301AGGAAGGACT CACCCCATAC CCTCCCCTGC AAGAAGCGGG AAGCATCCCA GTAACCAAAC
361CTGAATTGCC AAAGAAACCA AACCCTGGCC TTATACGAAG TGTTAATCCT GAGATTCCGG
421GAAGAGGGCC CCTGGCTGAG AGCTCTGATA GTGGGAAGAA AGTGCCAACT CCTGCCCCGC
481GGCCTTTGCT GCTGAAGAAA TCTGTTTCCT CAGAAAACCC CACCTACCCT TCAGCTCCAC
541TGAAACCTGT CACTGTTCCT CCCCGACTCG CAGGGGCATC ACAAGCCAAA GCATACAAGT
601CACTGGGAGA AGGGCCCCCA GCCAACCCCC CAGTTCCAGT TCTGCAGAGC AAGCCCTTGG
661TGGACATCGA TCTCATCAGC TTTGATGATG ATGTTTTGCC CACCCCATCG GGGAACCTGG
721CTGAAGAATC TGTTGGTTCA GAGATGGTTC TAGATCCCTT TCAGCTCCCT GCAAAAACAG
781AACCAATAAA AGAACGAGCA GTTCAACCAG CACCCACCAG GAAGCCCACT GTAATTCGAA
841TTCCAGCCAA ACCAGGAAAA TGTTTACATG AGGATCCACA AAGTCCACCT CCTCTCCCTG
901CTGAAAAACC TATTGGAAAC ACTTTCAGTA CAGTATCTGG AAAGCTCAGT AATGTTGAGA
961GAACTAGAAA CTTGGAATCC AACCACCCAG GTCAAACAGG AGGTTTTGTG CGAGTACCCC
1021CAAGGTTGCC ACCGAGACCT GTGAATGGAA AAACCATTCC AACTCAACAG CCTCCAACCA
1081AGGTGCCCCC TGAGAGACCA CCTCCCCCAA AGCTTTCTGC AACCAGAAGA TCTAATAAGA
1141AACTGCCTTT TAATCGATCC TCTTCTGACA TGGATCTTCA GAAAAAACAA AGTAACTTGG
1201CAACTGGACT CTCAAAAGCC AAGAGTCAAG TTTTTAAAAA TCAAGATCCG GTGCTACCCC
1261CTCGTCCCAA ACCAGGACAC CCTCTCTACA GTAAATACAT GCGTGGGGAT GTACTTGTGA
1321TGCTGAAGCA GACGGAAAAT AATTACTTGG AGTGCCAAAA GGGAGAAGAC ACTGGCAGAG
1381TTCACCTGTC TCAAATGAAG ATTATCACTC CACTTGATGA ACATCTTAGA AGCAGACCAA
1441ACGATCCAAG CCACGCTCAG AAGCCTGTTG ACAGTGGTGC TCCTCATGCT GTCGTTCTTC
1501ATGATTTCCC AGCAGAGCAA GTTGATGATT TGAACCTCAC TTCTGGAGAA ATTGTTTATC
1561TTCTGGAGAA GATAGATACA GATTGGTACA GAGGGAACTG TAGAAACCAG ATTGGCATAT
1621TTCCTGCCAA CTATGTCAAA GTGATTATTG ATATCCCAGA AGGAGGAAAT GGGAAAAGAG
1681AATGTGTTTC ATCTCATTGT GTTAAAGGCT CAAGATGTGT TGCTCGGTTT GAATATATTG
1741GAGAGCAGAA GGATGAGTTG AGTTTCTCAG AGGGAGAAAT TATTATTCTT AAAGAGTATG
1801TGAATGAGGA ATGGGCCAGA GGAGAAGTTC GAGGCAGAAC TGGGATTTTC CCCCTGAACT
1861TTGTGGAGCC TGTTGAGGAT TATCCCACCT CTGGTGCAAA TGTTTTAAGC ACAAAGGTAC
1921CACTGAAAAC CAAAAAAGAA GATTCTGGCT CAAACTCTCA GGTTAACAGT CTTCCGGCAG
1981AATGGTGTGA AGCTCTTCAC AGTTTTACAG CAGAGACCAG TGATGACTTA TCATTCAAGA
2041GGGGAGACCG GATCCAGATT CTGGAACGTC TGGATTCTGA CTGGTGCAGG GGCAGACTGC
2101AGGACAGGGA GGGGATCTTC CCAGCAGTGT TTGTGAGGCC CTGCCCAGCT GAGGCAAAAA
2161GTATGTTGGC CATAGTACCG AAGGGGAGGA AGGCCAAAGC CTTATATGAT TTCCGAGGGG
2221AGAATGAAGA TGAACTTTCC TTCAAGGCTG GAGATATAAT AACAGAGCTG GAATCTGTAG
2281ATGATGACTG GATGAGTGGA GAACTTATGG GAAAATCTGG AATATTTCCC AAAAACTACA
2341TACAGTTTCT ACAGATCAGC TTGCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
2401attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)