Construct: ORF ccsbBroadEn_10224
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013079.1_s300c1, BRDN0000390794
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FTH1P3 (2498)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2495 | FTH1 | ferritin heavy chain 1 | NM_002032.3 | 32.8% | 31.4% | (many diffs) |
| 2 | human | 2498 | FTH1P3 | ferritin heavy chain 1 pseu... | NR_002201.1 | 32.3% | 1_119del;429_954del | |
| 3 | mouse | 14319 | Fth1 | ferritin heavy polypeptide 1 | NM_010239.2 | 30% | 30.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 375
- ORF length:
- 309
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC CTCGGACTGC CCCAAGGCCC CCGCCGCAGC TCCAGCGCCG CGTAGCCACC 121 ACTGCCGCTG CCGCCGCCTC TCCTTAGTCG CCGGCATGAC GACCGCGTCT ACCTCGCAGG 181 TGCGCCAGAA CTACCACCAA GACTCAGAGG CCGCCATCAA CCGCCAGATC AACCTGGAGC 241 TCTACGCCTC CTCCATTTAC CTGTGCGTGG CTTACTACTT TGACAGCGAT GATGTGGCTT 301 TGAAGAACTT TGCCAAATAC TTTCTTCACC AATCTCATGA GGAGAGGGAA CATGCTGAGA 361 AATTGATGAA GCTGTACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 421 tatcaatttg ttgcaacgaa c