Construct: ORF ccsbBroadEn_10227
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018191.1_s300c1, BRDN0000391799
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF85 (7639)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7639 | ZNF85 | zinc finger protein 85 | NM_001256172.2 | 63.2% | 63.2% | 1_96del |
| 2 | human | 440519 | ZNF724 | zinc finger protein 724 | XM_024451521.1 | 48.2% | 43.6% | (many diffs) |
| 3 | human | 9534 | ZNF254 | zinc finger protein 254 | NM_001278665.2 | 41.9% | 36.4% | (many diffs) |
| 4 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_017012129.1 | 35.8% | 31.2% | (many diffs) |
| 5 | human | 7697 | ZNF138 | zinc finger protein 138 | NM_001271637.2 | 31.4% | 17.2% | (many diffs) |
| 6 | human | 7639 | ZNF85 | zinc finger protein 85 | NR_045830.2 | 10.5% | 1_259del;425_1568del | |
| 7 | human | 113835 | ZNF257 | zinc finger protein 257 | NM_001316996.2 | 8.6% | 7.3% | (many diffs) |
| 8 | human | 7639 | ZNF85 | zinc finger protein 85 | NM_001256171.1 | 7.9% | 7.3% | (many diffs) |
| 9 | human | 7639 | ZNF85 | zinc finger protein 85 | XM_011528263.2 | 7.9% | 7.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 231
- ORF length:
- 165
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTT AGAGAACTAC AGAAACCTGG TCTTCCTGGG TATTACTGTT TCTAAGCCAG 121 ACCTGATCAC TTGTCTGGAG CAAGGGAAAG AGGCCTGGAG TATGAAGAGA CATGAGATCA 181 TGGTGGCCAA ACCCACAGAA TCTTACTCTG TCACCCAGTC TGGAATGCAG TACCCAACTT 241 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac