Construct: ORF ccsbBroadEn_10254
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014053.1_s300c1, BRDN0000387592
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ABCA11P (79963)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79963 | ABCA11P | ATP binding cassette subfam... | NR_002451.2 | 10.4% | 1_1046del;1245_1895del | |
| 2 | human | 10349 | ABCA10 | ATP binding cassette subfam... | NM_080282.3 | 4% | 3.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 267
- ORF length:
- 198
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGACCCTGAG GGGCAGCAGC AAATGTGGCA GATACTTCAG GCTACCATTA 121 AAAACCAGGA GAGGGGCGCC CTCTTGACCA CCCATTACAT GTCAGAGGCT AAGTCTCTGT 181 GTGACCGTGT GGCCATCATG GTGTCAGGAA CGCTAAGGTG TATTGGTTCC ATTCAACAGC 241 TGAAAAGTTT GGTAAAGATT ATTTACTTGC CAACTTTCTT GTACAAAGTt ggcattataa 301 gaaagcattg cttatcaatt tgttgcaacg aac