Construct: ORF ccsbBroadEn_10267
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000324.1_s300c1, BRDN0000393429
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DSCR8 (84677)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84677 | DSCR8 | Down syndrome critical regi... | NR_026842.1 | 23.5% | 1_171del;283_471del | |
| 2 | human | 84677 | DSCR8 | Down syndrome critical regi... | NR_026841.1 | 19.5% | 1_171del;252_348del;380_568del | |
| 3 | human | 84677 | DSCR8 | Down syndrome critical regi... | NR_026840.1 | 18.9% | 1_171del;252_366del;398_586del | |
| 4 | human | 84677 | DSCR8 | Down syndrome critical regi... | NR_026839.1 | 14.2% | (many diffs) | |
| 5 | human | 84677 | DSCR8 | Down syndrome critical regi... | NR_026838.1 | 12.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 177
- ORF length:
- 111
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA GGAGCCTGGA CCCAACTTTG TTACTGTGAG AAAGGGTCTT CATTCATTCA 121 AGATGGCATT TGTTAAGCAC CTACTACAAA CCTTGGAAAT CAAGAAAGTT CTGGAATGCC 181 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 241 aac