Construct: ORF ccsbBroadEn_10280
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005321.1_s300c1, BRDN0000387254
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KIR3DX1 (90011)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 90011 | KIR3DX1 | killer cell immunoglobulin ... | NR_104096.1 | 7.3% | 1_898del;1133_3175del | |
| 2 | human | 90011 | KIR3DX1 | killer cell immunoglobulin ... | NR_104095.1 | 7.3% | 1_916del;1151_3193del | |
| 3 | human | 90011 | KIR3DX1 | killer cell immunoglobulin ... | NR_104097.1 | 7.1% | 1_1009del;1244_3286del | |
| 4 | human | 90011 | KIR3DX1 | killer cell immunoglobulin ... | NR_026716.2 | 6.6% | 1_1236del;1471_3513del | |
| 5 | human | 90011 | KIR3DX1 | killer cell immunoglobulin ... | NR_136268.1 | 6.5% | 1_1236del;1471_3586del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 300
- ORF length:
- 234
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC AAACACAGAG CCCACGGAAG GCCAACGGAC GGATGAAGAG GAGCCTGCAG 121 CAGAAGAGAC ACAGGAGATC ATATATGCCC AGTTAAACCA CCAGGCCCTC TCACAGACAG 181 GATTCCCTCC TGCCTCCCAG TGTCCCCACT ACCTCTCGGA GGATCCTAGT ATCTACATCA 241 CTGTCCACCA AGCCCAGGCT GAGGCCAGAG CTGCCCCCAG TCTTTGGCAC AAAGGGCATT 301 ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 361 acgaac