Construct: ORF ccsbBroadEn_10288
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010370.1_s300c1, BRDN0000394542
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PCAT4 (118425)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 118425 | PCAT4 | prostate cancer associated ... | NR_026555.1 | 4.8% | 1_37del;140_2091del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 171
- ORF length:
- 102
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTGCTGTGAA ATCTACTACC GTTTGCTGGT TTTGAAAATG GAGAAAAAGA 121 GTGAGGAACT GAGAAACATG GATGGCCTTG GGAACGTGGA AAAGGGTCAC TTGCCAACTT 181 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac