Transcript: Human NR_026555.1

Homo sapiens prostate cancer associated transcript 4 (PCAT4), long non-coding RNA.

Source:
NCBI, updated 2018-05-18
Taxon:
Homo sapiens (human)
Gene:
PCAT4 (118425)
Length:
2091
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_026555.1
NBCI Gene record:
PCAT4 (118425)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_026555.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000142687 CGGAGAAATCCTGGTTACACT pLKO.1 250 3UTR 100% 3.000 4.200 N PCAT4 n/a
2 TRCN0000143504 GAAATCCTGGTTACACTGCTT pLKO.1 254 3UTR 100% 2.640 2.112 N PCAT4 n/a
3 TRCN0000142658 GCTTGAATCCTGTCAGTCCTA pLKO.1 271 3UTR 100% 2.640 2.112 N PCAT4 n/a
4 TRCN0000145359 GAACTCAAGGAGGCTATTTAT pLKO.1 156 3UTR 100% 15.000 10.500 N PCAT4 n/a
5 TRCN0000122152 GAGTGAGGAACTGAGAAACAT pLKO.1 88 3UTR 100% 5.625 3.938 N PCAT4 n/a
6 TRCN0000145233 GAAAGCTTATCTGGAGTGAAA pLKO.1 200 3UTR 100% 4.950 3.465 N PCAT4 n/a
7 TRCN0000121688 GCTATTTATGACCATGTCATT pLKO.1 168 3UTR 100% 4.950 3.465 N PCAT4 n/a
8 TRCN0000144737 GTAAATGAGACCAACAGAGAT pLKO.1 221 3UTR 100% 4.950 3.465 N PCAT4 n/a
9 TRCN0000142611 GTCCTATACTGGAGTCCTGTT pLKO.1 286 3UTR 100% 4.050 2.835 N PCAT4 n/a
10 TRCN0000122641 GAAACATGGATGGCCTTGGGA pLKO.1 102 3UTR 100% 0.750 0.525 N PCAT4 n/a
11 TRCN0000144429 CCATGTCATTTGCAACATGAA pLKO.1 179 3UTR 100% 0.495 0.347 N PCAT4 n/a
12 TRCN0000143584 GAGGAACTGAGAAACATGGAT pLKO.1 92 3UTR 100% 3.000 1.800 N PCAT4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_026555.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10288 pDONR223 100% 4.8% None 1_37del;140_2091del n/a
2 ccsbBroad304_10288 pLX_304 0% 4.8% V5 1_37del;140_2091del n/a
3 TRCN0000470883 TTTCCTCAAAGACAACATCGTTAT pLX_317 100% 4.8% V5 1_37del;140_2091del n/a
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