Construct: ORF ccsbBroadEn_10313
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017046.1_s300c1, BRDN0000393363
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SBDSP1 (155370)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51119 | SBDS | SBDS ribosome maturation fa... | NM_016038.4 | 23.6% | 23.2% | (many diffs) |
| 2 | human | 155370 | SBDSP1 | SBDS pseudogene 1 | NR_024109.1 | 19.1% | (many diffs) | |
| 3 | human | 155370 | SBDSP1 | SBDS pseudogene 1 | NR_001588.2 | 18.4% | 1_283del;467_992del | |
| 4 | human | 155370 | SBDSP1 | SBDS pseudogene 1 | NR_024110.1 | 10.5% | 1_283del;467_1734del | |
| 5 | human | 155370 | SBDSP1 | SBDS pseudogene 1 | NR_024111.1 | 10.3% | (many diffs) | |
| 6 | mouse | 66711 | Sbds | SBDS ribosome assembly guan... | NM_023248.2 | 22.8% | 22.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 249
- ORF length:
- 183
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC GATCTTCACC CCCACCAACC AGATCCGCCT AACCAATGTG GCCGTGGTAC 121 GGATGAAGCG CGCCAGGAAG CGCTTCGAAA TCGCCTGCTA CAGAAACAAG GTCGTCGGCT 181 GGCGGAGCGG CTTGGAAAAA GACCTTGATG AAGTTCTGCA GACCCACTCA GTGTTTGTAA 241 ATGTTTCCTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 301 tttgttgcaa cgaac