Construct: ORF ccsbBroadEn_10358
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018399.1_s300c1, BRDN0000398029
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- AKR1C8P (340811)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 340811 | AKR1C8P | aldo-keto reductase family ... | NR_027916.2 | 17.7% | 1_83del;471_2182del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 456
- ORF length:
- 387
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GATGACGGAT CTGAAGCAAA GCCATTCAGT GAGGCTGAAT GATGGACCCT 121 TCATGCCAGT GCTGGGATTT GGCACTTATG CTCCTGATCA TACTCCCAAA AGCCAGGCTG 181 CCGAGGCCAC CAAAGTGGCT ATTGACGTAG GCTTCCGCCA TATTGATTCA GCATACTTAT 241 ACCAAAATGA GGAGGAGGTT GGACAGGCCA TTTGGGAGAA GATCGCTGAT GGTACCGTCA 301 AGAGAGAGGA AATATTCTAC ACCATCAAGC TTTGGGCTAC TTTCTTTCGG GCAGAATTGG 361 TTCACCCGGC CCTAGAAAGG TCACTGAAGA AACTTGGACC GGACTATGTA GATCTCTTCA 421 TTATTCATGT ACCATTTGCT ATGAAGGGTT CTTCCTTGCC AACTTTCTTG TACAAAGTtg 481 gcattataag aaagcattgc ttatcaattt gttgcaacga ac