Construct: ORF ccsbBroadEn_10371
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002398.1_s300c1, BRDN0000394310
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC02687 (399886)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 399886 | LINC02687 | long intergenic non-protein... | NR_122071.1 | 19.2% | 1_70del;572_2597del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 570
- ORF length:
- 501
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCAGCTCTT TCTTCTCGGT GCCCTCGCAG TGCAGCAGGC CCCGCTTATT 121 TGCAAGAAGC AGCCAGGTCA GCCCACTGGG CCTCCCCACC TCTTGTGCCC CTTCGCACAT 181 TTCAGAGCTC TCTCTTTTCC TCTGGGTCCT TCCATTCAAG AGAGGAGGAG GAGGAGGGGG 241 TGAGCCTGTT GCGAACGGCG TTGGTGGGGC AGGGGCCGGT TCCCCTGTTT CTGGGGAGCC 301 TTTTCTGTGC TGGTTGCAGG CAGGGGCCCT CAGTGTGGAG CTGTGGTGAG CCTGTGCCCC 361 GTCGTATTTG GGTCACAGCC TCCGTGACCC CTAGCCCCCG CCAGGCACTC CACCCCTGCA 421 GTGATTCGCT TGATATTTTA AAAGCACTCC ATCTTCTGCC TGCTGCCTTC TCTCCATTCA 481 TCTGGGTCCA GGTTTTCGCC GAGCCATCTA ATAAAGAATC CAGGGGGGAG AATGATGGGG 541 GCGAGGAGAG GGAAAGTGCT AACATTTATT TGCCAACTTT CTTGTACAAA GTtggcatta 601 taagaaagca ttgcttatca atttgttgca acgaac