Construct: ORF ccsbBroadEn_10391
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017596.1_s300c1, BRDN0000393392
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 441394 | SUGT1P1 | SUGT1 pseudogene 1 | NR_003667.3 | 29.2% | 1_543del;784_820del | |
| 2 | human | 10910 | SUGT1 | SGT1 homolog, MIS12 kinetoc... | NM_001320831.2 | 24.7% | 17.4% | (many diffs) |
| 3 | human | 10910 | SUGT1 | SGT1 homolog, MIS12 kinetoc... | XM_017020366.2 | 22.1% | 16.8% | (many diffs) |
| 4 | human | 10910 | SUGT1 | SGT1 homolog, MIS12 kinetoc... | XM_017020367.1 | 22.1% | 16.8% | (many diffs) |
| 5 | human | 10910 | SUGT1 | SGT1 homolog, MIS12 kinetoc... | NM_006704.5 | 21.9% | 14.2% | (many diffs) |
| 6 | human | 10910 | SUGT1 | SGT1 homolog, MIS12 kinetoc... | XM_017020365.1 | 20% | 14% | (many diffs) |
| 7 | human | 10910 | SUGT1 | SGT1 homolog, MIS12 kinetoc... | NM_001130912.3 | 20% | 13.9% | (many diffs) |
| 8 | human | 10910 | SUGT1 | SGT1 homolog, MIS12 kinetoc... | XM_011534893.3 | 16.7% | 10.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 306
- ORF length:
- 240
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC CAGCCAGAAA CGCATCTTTT TCTACATAGT TGCTGTTGCT GATGCAAAGA 121 AGTCTCGCGA ATTCAATCCA AATAATTCCA CTGCTGTGCT GAGAAAAGGG ATATGTGAAT 181 ACCATTTAAA AAACTATGCT GCTGCTCTAG AAACTTTTAT AGGAGGACAA AAATTAGTGC 241 AGATGCTAAT TTCAGTGACT GGATTAAAAG GTGTCAAGAA GCTCAGAATG GCTCAGAATC 301 TGAGGTGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 361 gttgcaacga ac