Construct: ORF ccsbBroadEn_10405
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006888.1_s300c1, BRDN0000397240
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LOC727751 (727751)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84559 | GOLGA2P2Y | GOLGA2 pseudogene 2 Y-linked | NR_001555.2 | 22.8% | (many diffs) | |
| 2 | human | 401634 | GOLGA2P3Y | GOLGA2 pseudogene 3 Y-linked | NR_002195.2 | 22.8% | (many diffs) | |
| 3 | human | 101929479 | LOC101929479 | golgin A2 pseudogene | NR_158179.1 | 16.7% | (many diffs) | |
| 4 | human | 101929479 | LOC101929479 | golgin A2 pseudogene | NR_160936.1 | 12.1% | (many diffs) | |
| 5 | human | 80154 | GOLGA2P10 | GOLGA2 pseudogene 10 | NR_026811.3 | 8.2% | 1_381del;640_3114del | |
| 6 | human | 727751 | LOC727751 | golgin A2 pseudogene | NR_102748.1 | 8.2% | (many diffs) | |
| 7 | human | 102724135 | LOC102724135 | uncharacterized LOC102724135 | NR_158192.1 | 8% | (many diffs) | |
| 8 | human | 80154 | GOLGA2P10 | GOLGA2 pseudogene 10 | NR_103496.2 | 8% | (many diffs) | |
| 9 | human | 729668 | GOLGA2P6 | GOLGA2 pseudogene 6 | NR_120609.1 | 7.8% | (many diffs) | |
| 10 | human | 2801 | GOLGA2 | golgin A2 | XM_005251932.1 | 7.7% | 6.2% | (many diffs) |
| 11 | human | 2801 | GOLGA2 | golgin A2 | NM_001366246.1 | 7.6% | 6.1% | (many diffs) |
| 12 | human | 2801 | GOLGA2 | golgin A2 | NM_004486.5 | 7.6% | 6.1% | (many diffs) |
| 13 | human | 2801 | GOLGA2 | golgin A2 | NM_001366244.1 | 7.4% | 5.9% | (many diffs) |
| 14 | human | 80154 | GOLGA2P10 | GOLGA2 pseudogene 10 | NR_033936.3 | 7.2% | (many diffs) | |
| 15 | human | 388152 | GOLGA2P7 | GOLGA2 pseudogene 7 | NR_027001.1 | 7.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 324
- ORF length:
- 258
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC GAACATCCCA GGGGACCTGG AGAGCCGGGA GGCCATGGTG GCATTTTTCA 121 ACTCCGCTGG AGCCAATGCC CAGGAGGAAC AAAGGGTGTG CTGCCAGCCC CTGGCTCACC 181 CAGTGGCCTC GTCCCAGAAA AAGCCAGAGG TAGCGGCCCC AGCCCCAGAG AGTGGGGGTG 241 AGTCTGTGTT TGGGGAGACC CACCGGGCCC TGCAGGGGGC CATGGAGAAG CTGCAGCGAC 301 TTTATGGAAG GAGAAGGTGG ACCTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa 361 agcattgctt atcaatttgt tgcaacgaac