Construct: ORF ccsbBroadEn_10409
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001972.1_s300c1, BRDN0000394568
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LSP1P3 (729862)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 729862 | LSP1P3 | LSP1 pseudogene 3 | NR_033961.1 | 64.8% | 1_99del;388_444del | |
| 2 | human | 6801 | STRN | striatin | XM_005264519.5 | 11% | 9.8% | (many diffs) |
| 3 | human | 6801 | STRN | striatin | NM_003162.4 | 10.5% | 9.4% | (many diffs) |
| 4 | human | 6801 | STRN | striatin | XM_011533073.2 | 10.1% | 9% | (many diffs) |
| 5 | mouse | 268980 | Strn | striatin, calmodulin bindin... | NM_011500.2 | 9.8% | 9.4% | (many diffs) |
| 6 | mouse | 268980 | Strn | striatin, calmodulin bindin... | XM_006524357.2 | 9.4% | 9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 357
- ORF length:
- 288
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAGCAACAAA AGCTTCTGGG AGCAGAAGGG AGGCTCCAAG ACCTCATCAA 121 CAATTACGGC CCAGATTGCC TTCCTACAGG GAGAAAGGAA GGGCCAAGAA AATTTGAAGA 181 AGGATCTCGT GAGGATGATC AGAATGTTGG AGTATGCTCT TAAACAGAAA AGAGCCAAAT 241 ACCACAAGTT GAAATATGGG ACAGAATTGA ATCAGGGAGC TATGAAGCCT CCAAGCTATG 301 ATTCTGATGA AGGTAATGAA ACAGAAGTGC AGCCACAACA AAACAGCCAG TTAATGTTGC 361 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 421 aac