Construct: ORF ccsbBroadEn_10445
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004364.1_s300c1, BRDN0000386034
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SPIB (6689)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6689 | SPIB | Spi-B transcription factor | NM_003121.5 | 99.7% | 99.6% | 309T>C;784G>C |
| 2 | human | 6689 | SPIB | Spi-B transcription factor | NM_001244000.2 | 87.9% | 56.8% | (many diffs) |
| 3 | human | 6689 | SPIB | Spi-B transcription factor | NM_001243999.2 | 67.4% | 62.1% | 309T>C;484_485insAGGC;531_532ins251 |
| 4 | human | 6689 | SPIB | Spi-B transcription factor | NM_001243998.1 | 65.1% | 58% | 0_1ins58;65_66ins215;511G>C |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 852
- ORF length:
- 786
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGNCATGCT CGCCCTGGAG GCTGCACAGC TCGACGGGCC ACACTTCAGC TGTCTGTACC 121 CAGATGGCGT CTTCTATGAC CTGGACAGCT GCAAGCATTC CAGCTACCCT GATTCAGAGG 181 GGGCTCCTGA CTCCCTGTGG GACTGGACTG TGGCCCCACC TGTCCCAGCC ACCCCCTATG 241 AAGCCTTCGA CCCGGCAGCA GCCGCTTTTA GCCACCCCCA GGCTGCCCAG CTCTGCTACG 301 AACCCCCCAC CTACAGCCCT GCAGGGAACC TCGAACTGGC CCCCAGCCTG GAGGCCCCGG 361 GGCCTGGCCT CCCCGCATAC CCCACGGAGA ACTTCGCTAG CCAGACCCTG GTTCCCCCGG 421 CATATGCCCC GTACCCCAGC CCTGTGCTAT CAGAGGAGGA AGACTTACCG TTGGACAGCC 481 CTGCCCTGGA GGTCTCGGAC AGCGAGTCGG ATGAGGCCCT CGTGGCTGGC CCCGAGGGGA 541 AGGGATCCGA GGCAGGGACT CGCAAGAAGC TGCGCCTGTA CCAGTTCCTG CTGGGGCTAC 601 TGACGCGCGG GGACATGCGT GAGTGCGTGT GGTGGGTGGA GCCAGGCGCC GGCGTCTTCC 661 AGTTCTCCTC CAAGCACAAG GAACTCCTGG CGCGCCGCTG GGGCCAGCAG AAGGGGAACC 721 GCAAGCGCAT GACCTACCAG AAGCTGGCGC GCGCCCTCCG AAACTACGCC AAGACCGGCG 781 AGATCCGCAA GGTCAAGCGC AAGCTCACCT ACCAGTTCGA CAGCGCGCTG CTGCCTGCAG 841 TCCGCCGGCC CTGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 901 caatttgttg caacgaac