Construct: ORF ccsbBroadEn_10462
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017405.1_s300c1, BRDN0000385455
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TEX11 (56159)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 56159 | TEX11 | testis expressed 11 | NM_031276.3 | 99% | 99% | (many diffs) |
| 2 | human | 56159 | TEX11 | testis expressed 11 | NM_001003811.2 | 97.2% | 97% | (many diffs) |
| 3 | human | 56159 | TEX11 | testis expressed 11 | XM_011530994.1 | 96.6% | 96.3% | (many diffs) |
| 4 | human | 56159 | TEX11 | testis expressed 11 | XM_017029649.1 | 96.5% | 95.6% | (many diffs) |
| 5 | human | 56159 | TEX11 | testis expressed 11 | XM_011530996.1 | 66.9% | 66.9% | (many diffs) |
| 6 | human | 56159 | TEX11 | testis expressed 11 | XM_017029650.1 | 65.6% | 63.9% | (many diffs) |
| 7 | human | 56159 | TEX11 | testis expressed 11 | XM_017029651.1 | 64.7% | 63.7% | (many diffs) |
| 8 | human | 56159 | TEX11 | testis expressed 11 | XM_017029652.2 | 55.3% | 54.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2817
- ORF length:
- 2751
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CTTTAAAGAA GTTGTTGAAA ACCTGGTTAC AAATGATAAT TCACCTAACA 121 TACCAGAGGC AATTGATAGA CTCTTCAGCG ACATAGCAAA TATCAACAGG GAGTCTATGG 181 CTGAAATAAC AGACATTCAG ATTGAAGAAA TGGCAGTAAA CCTATGGAAC TGGGCACTTA 241 CCATAGGAGG AGGTTGGCTT GTAAATGAAG AGCAGAAAAT TAGATTACAT TATGTTGCTT 301 GCAAGTTGCT GAGTATGTGT GAAGCCTCAT TTGCCTCAGA ACAAAGTATT CAACGACTGA 361 TTATGATGAA TATGAGAATA GGAAAAGAAT GGTTGGATGC TGGAAATTTT CTAATCGCTG 421 ATGAATGTTT TCAAGCTGCT GTGGCCAGTC TGGAGCAATT ATACGTCAAA TTAATTCAAA 481 GGAGCTCCCC TGAGGCTGAC TTGACCATGG AGAAGATTAC TGTTGAGAGT GACCACTTCA 541 GAGTGCTTTC TTACCAAGCA GAGTCAGCAG TTGCTCAAGG GGATTTTCAA AGAGCATCTA 601 TGTGTGTACT GCAATGTAAA GATATGTTGA TGAGGCTCCC CCAGATGACT TCAAGTCTTC 661 ATCATCTCTG TTACAACTTT GGAGTAGAAA CCCAGAAGAA TAATAAATAT GAAGAAAGTT 721 CTTTCTGGCT TAGCCAAAGC TATGATATTG GGAAGATGGA TAAGAAATCT ACTGGGCCAG 781 AAATGCTGGC TAAAGTTCTA CGGCTATTAG CCACGAATTA TTTGGATTGG GATGACACCA 841 AATATTATGA TAAGGCTCTC AATGCTGTAA ACCTAGCAAA CAAGGAACAT TTAAGTTCTC 901 CTGGGCTTTT CTTAAAAATG AAAATCCTCT TGAAAGGCGA AACATCTAAT GAAGAACTCC 961 TTGAAGCTGT CATGGAAATA CTACATCTTG ACATGCCCTT AGACTTCTGT CTGAACATTG 1021 CTAAACTGCT GATGGATCAT GAAAGAGAAT CTGTTGGGTT TCATTTCCTG ACGATTATTC 1081 ATGAACGTTT TAAGTCATCG GAAAATATTG GAAAAGTTCT GATACTCCAT ACTGACATGC 1141 TTTTACAAAG GAAGGAAGAA CTTCTTGCCA AGGAGAAGAT TGAAGAAATC TTTTTAGCTC 1201 ACCAAACAGG AAGACAACTG ACAGCAGAAT CAATGAACTG GTTACACAAC ATTCTGTGGA 1261 GACAAGCTGC CAGTAGTTTT GAGGTACAAA ATTACACTGA TGCCCTACAA TGGTACTATT 1321 ATTCTCTGAG GTTTTATTCA ACTGATAAAA TGGATCTGGA CTTCACCAAG CTGCAGAGGA 1381 ACATGGCTTG CTGTTACCTG AATTTGCAAC AACTTGATAA GGCCAAAGAG GCAGTGGCAG 1441 AAGCTGAACG ACATGACCCT AGGAACGTTT TCACTCAATT TTATATATTC AAGATTGCAG 1501 TCATAGAGGG CAACTCTGAA AGAGCTTTGC AGGCAATAAT TACTTTAGAG AATATATTAA 1561 CAGATGAAGA GTCAGAAGAT AATGATCTAG TTGCAGAGAG AGGTTCACCT ACCATGCTTC 1621 TAAGTTTAGC TGCCCAGTTT GCTCTAGAGA ATGGACAACA AATTGTGGCA GAAAAAGCTT 1681 TGGAATATTT AGCTCAACAT TCAGAAGACC AGGAACAAGT TCTTACAGCT GTAAAGTGTT 1741 TGCTTCGTTT TCTTCTTCCA AAAATTGCTG AAATGCCGGA ATCTGAAGAT AAGAAGAAAG 1801 AAATGGATCG ACTTTTGACT TGCCTGAATA GAGCCTTTGT GAAACTTTCT CAGCCTTTTG 1861 GTGAAGAAGC CTTAAGTTTG GAGTCAAGAG CTAATGAAGC TCAGTGGTTT CGAAAAACAG 1921 CTTGGAACTT GGCTGTGCAA TGTGACAAAG ATCCAGTGAT GATGAGAGAG TTTTTTATAC 1981 TTTCTTATAA GATGTCCCAG TTTTGTCCTT CTGATCAAGT AATTCTGATT GCACGGAAAA 2041 CATGTTTACT TATGGCAGTT GCAGTTGATC TAGAGCAAGG GAGAAAAGCT TCAACAGCTT 2101 TTGAACAGAC CATGTTCCTG AGTCGTGCAC TTGAGGAGAT CCAGACATGC AATGACATCC 2161 ATAATTTCCT GAAACAAACA GGGACCTTCT CAAATGATTC ATGTGAGAAA TTGCTTCTGC 2221 TGTACGAGTT TGAAGTTAGA GCCAAATTGA ATGATCCATT ACTGGAAAGC TTCCTGGAAT 2281 CAGTGTGGGA GTTGCCTCAT TTAGAAACTA AAACATTTGA AACAATTGCA ATAATAGCAA 2341 TGGAAAAGCC TGCACACTAT CCTTTGATTG CTCTCAAGGC CTTGAAAAAG GCTTTATTGC 2401 TCTACAAAAA GGAAGAACCA ATTGATATAT CACAATACAG CAAATGTATG CACAACTTGG 2461 TTAACCTCTC AGTGCCAGAT GGGGCGTCGA ATGTAGAGCT CTGTCCCCTG GAAGAAGTTT 2521 GGGGCTATTT TGAAGACGCT CTGAGCCACA TTAGCCGCAC TAAAGACTAC CCAGAAATGG 2581 AGATTCTCTG GCTGATGGTC AAGTCCTGGA ATACCGGAGT ACTTATGTTT AGCAGGAGCA 2641 AGTATGCATC TGCTGAAAAG TGGTGTGGCC TGGCCTTGCG TTTCCTTAAC CACCTTACCT 2701 CCTTCAAGGA AAGCTATGAA ACTCAGATGA ATATGCTGTA TAGTCAGCTT GTGGAAGCAT 2761 TGAGTAACAA CAAGGGCCCA GTTTTTCATG AACATGGCTA CTGGAGCAAG TCAGATTACC 2821 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 2881 aac