Construct: ORF ccsbBroadEn_10495
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004211.1_s300c1, BRDN0000394988
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KIAA0087 (9808)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9808 | KIAA0087 | KIAA0087 lncRNA | NR_022006.1 | 9.5% | 1_271del;525A>G;686_4320del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 483
- ORF length:
- 414
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAAGCTTGG GAGTCATCCC AACCCTTGCT CAGGTGCGAA ATCCCCTGCC 121 CTCTGCCTGG CACTGATAGG GACGGATCAG TTTCTCTGCC TGGAGAGGCA GCCTCCTGTG 181 ACCTGGATAC ATTGGAGCCT GAACACGGGA ACAGAAGGGT CTCTGGGAAT CCAATCTCAG 241 TCTGTTGGGC TTACAAAGTG ACCAAAGTCA AATGCTGGTC TGTGAGAGAA AGAGGAGGCA 301 GACACATCGG GGGACCGAGA AGTACTTTGA AGCACCCCGC TCACCATGGT ATGGGGAAGA 361 ATTTGGCCAC ATCCCTGCCA ACTGCTGCTT CTCTTGGACT GGGAAAGGGT CAGTTGCTTG 421 TTTCTATCAG ATTCATGGAC ACCACCAAGA AAAGAGGCCA GTCTGAGACA TTCAATATTT 481 GTTTGCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 541 gcaacgaac