Construct: ORF ccsbBroadEn_10496
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003238.1_s300c1, BRDN0000396136
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRAPPC2B (10597)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10597 | TRAPPC2B | trafficking protein particl... | NM_001355204.2 | 99.7% | 100% | 75T>C |
| 2 | human | 6399 | TRAPPC2 | trafficking protein particl... | NM_001011658.4 | 98.3% | 100% | (many diffs) |
| 3 | human | 6399 | TRAPPC2 | trafficking protein particl... | NM_014563.5 | 98.3% | 100% | (many diffs) |
| 4 | human | 6399 | TRAPPC2 | trafficking protein particl... | XM_011545565.1 | 98.3% | 100% | (many diffs) |
| 5 | human | 6399 | TRAPPC2 | trafficking protein particl... | XM_011545566.2 | 98.3% | 100% | (many diffs) |
| 6 | human | 6399 | TRAPPC2 | trafficking protein particl... | NM_001128835.3 | 79.1% | 80.4% | (many diffs) |
| 7 | mouse | 66226 | Trappc2 | trafficking protein particl... | NM_025432.4 | 89.7% | 97.8% | (many diffs) |
| 8 | mouse | 66050 | 0610009B22Rik | RIKEN cDNA 0610009B22 gene | NM_025319.2 | 86.9% | 95% | (many diffs) |
| 9 | mouse | 66050 | 0610009B22Rik | RIKEN cDNA 0610009B22 gene | XM_006533917.3 | 86.9% | 95% | (many diffs) |
| 10 | mouse | 66050 | 0610009B22Rik | RIKEN cDNA 0610009B22 gene | XM_006533918.2 | 86.9% | 95% | (many diffs) |
| 11 | mouse | 66050 | 0610009B22Rik | RIKEN cDNA 0610009B22 gene | XM_006533919.2 | 86.9% | 95% | (many diffs) |
| 12 | mouse | 66226 | Trappc2 | trafficking protein particl... | NM_001313722.1 | 45.7% | 48.5% | (many diffs) |
| 13 | mouse | 100044633 | LOC100044633 | trafficking protein particl... | XM_017320511.1 | 43.8% | 48.5% | (many diffs) |
| 14 | mouse | 66226 | Trappc2 | trafficking protein particl... | XR_003953020.1 | 24% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 486
- ORF length:
- 420
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC TGGAAGCTTC TACTTTGTAA TTGTTGGTCA CCATGATAAT CCAGTTTTTG 121 AAATGGAGTT TTTGCCAGCC GGGAAGGCAG AATCCAAAGA CGACCATCGT CATCTGAACC 181 AGTTCATAGC TCATGCTGCT CTCGACCTCG TAGATGAGAA CATGTGGCTG TCGAACAACA 241 TGTACTTGAA AACTGTGGAC AAGTTCAACG AGTGGTTTGT GTCAGCATTT GTCACCGCGG 301 GGCATATGAG GTTTATTATG CTTCATGACA TAAGACAAGA AGATGGAATA AAGAACTTCT 361 TTACTGATGT TTATGATTTA TATATAAAAT TTTCAATGAA TCCATTTTAT GAACCCAATT 421 CTCCTATTCG ATCAAGTGCA TTTGACAGAA AAGTTCAGTT TCTTGGGAAG AAACACCTTT 481 TAAGCTGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 541 gttgcaacga ac