Construct: ORF ccsbBroadEn_10528
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002028.1_s300c1, BRDN0000393856
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CROCCP2 (84809)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84809 | CROCCP2 | CROCC pseudogene 2 | NR_026752.1 | 18.7% | (many diffs) | |
| 2 | human | 9696 | CROCC | ciliary rootlet coiled-coil... | XR_002958164.1 | 6.3% | (many diffs) | |
| 3 | human | 9696 | CROCC | ciliary rootlet coiled-coil... | XM_006711058.3 | 5.3% | 5% | (many diffs) |
| 4 | human | 9696 | CROCC | ciliary rootlet coiled-coil... | XM_024451092.1 | 5.3% | 5% | (many diffs) |
| 5 | human | 9696 | CROCC | ciliary rootlet coiled-coil... | XM_017002915.2 | 5.2% | 4.9% | (many diffs) |
| 6 | human | 9696 | CROCC | ciliary rootlet coiled-coil... | NM_014675.5 | 5.1% | 4.9% | (many diffs) |
| 7 | human | 9696 | CROCC | ciliary rootlet coiled-coil... | XM_017002914.2 | 5.1% | 4.8% | (many diffs) |
| 8 | human | 114819 | CROCCP3 | CROCC pseudogene 3 | NR_023386.1 | 5.1% | (many diffs) | |
| 9 | human | 9696 | CROCC | ciliary rootlet coiled-coil... | XM_011542470.3 | 5% | 4.7% | (many diffs) |
| 10 | human | 9696 | CROCC | ciliary rootlet coiled-coil... | XM_024451090.1 | 4.9% | 4.6% | (many diffs) |
| 11 | human | 9696 | CROCC | ciliary rootlet coiled-coil... | XM_017002913.2 | 4.8% | 4.6% | (many diffs) |
| 12 | human | 9696 | CROCC | ciliary rootlet coiled-coil... | XM_011542468.2 | 4.8% | 4.6% | (many diffs) |
| 13 | human | 9696 | CROCC | ciliary rootlet coiled-coil... | XR_002958163.1 | 3.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 399
- ORF length:
- 333
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT GCAGGCCAAG AAGACCGAGG TGGCCGAGGC GCTGACCAAG GCTGAGGCTG 121 GCCGCATGGA GCTCGAGCTC TCCGTGACCA AGCTGAGGGC AGAGGAGGCC TCCCTGCAGG 181 ACTCCCTGTC CAAGCTGAGC GCCCTCAACG AGAGCCTTGC TCAGGACAAG TTGGATCTGA 241 ACTGCCTTGT CACCCAGCTG GAGGAAGAAA AGGCCATGCT GCAGGGCCGG CAGCGGCAGG 301 CGGAGCAGGA GGCCACAGTG GCGCCGGCAG AGCAGGAGTG GCTGGAGGAG CTGTGGTTGG 361 AGCAGGAGGT GGCACGGCAG GGCCTGGAGG GCTCCCTATG CCCAACTTTC TTGTACAAAG 421 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac