Transcript: Human XM_011542468.2

PREDICTED: Homo sapiens ciliary rootlet coiled-coil, rootletin (CROCC), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CROCC (9696)
Length:
7868
CDS:
880..7335

Additional Resources:

NCBI RefSeq record:
XM_011542468.2
NBCI Gene record:
CROCC (9696)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011542468.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000423685 GAACATGACCGCCAAGTACTC pLKO_005 6559 CDS 100% 4.050 5.670 N CROCC n/a
2 TRCN0000446504 GCGGCAGCAAATAATAGCTAC pLKO_005 4134 CDS 100% 4.050 5.670 N CROCC n/a
3 TRCN0000135132 CCATTAAGTACAATGCGGTCA pLKO.1 1604 CDS 100% 2.160 3.024 N CROCC n/a
4 TRCN0000136893 CCAGGAGAAGATCAGCAAGAT pLKO.1 6138 CDS 100% 4.950 3.465 N CROCC n/a
5 TRCN0000137282 GCAAGATGAAGGCCAATGAGA pLKO.1 6152 CDS 100% 3.000 2.100 N CROCC n/a
6 TRCN0000137440 GATCAGCAAGATGAAGGCCAA pLKO.1 6147 CDS 100% 2.160 1.512 N CROCC n/a
7 TRCN0000417302 GAATGCCATGCTCCGAGAACA pLKO_005 1986 CDS 100% 4.950 2.970 N CROCC n/a
8 TRCN0000137439 GTCTCTGAAGGAGTCTGAGAA pLKO.1 4473 CDS 100% 4.950 2.475 Y CROCC n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011542468.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10528 pDONR223 100% 4.8% 4.6% None (many diffs) n/a
2 ccsbBroad304_10528 pLX_304 0% 4.8% 4.6% V5 (many diffs) n/a
3 TRCN0000466849 CTCATATTAGCACCATTCCCCTCA pLX_317 100% 4.8% 4.6% V5 (many diffs) n/a
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