Construct: ORF ccsbBroadEn_10535
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012530.1_s300c1, BRDN0000455521
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SERHL (94009)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 253190 | SERHL2 | serine hydrolase like 2 | XR_001755198.2 | 75.1% | (many diffs) | |
| 2 | human | 253190 | SERHL2 | serine hydrolase like 2 | XM_024452197.1 | 69.3% | 58.4% | (many diffs) |
| 3 | human | 253190 | SERHL2 | serine hydrolase like 2 | NM_014509.5 | 64.3% | 55% | (many diffs) |
| 4 | human | 253190 | SERHL2 | serine hydrolase like 2 | XM_017028739.2 | 59.8% | 50.7% | (many diffs) |
| 5 | human | 253190 | SERHL2 | serine hydrolase like 2 | XM_024452196.1 | 59.2% | 50.8% | (many diffs) |
| 6 | human | 253190 | SERHL2 | serine hydrolase like 2 | XR_244363.3 | 46.2% | (many diffs) | |
| 7 | human | 94009 | SERHL | serine hydrolase like (pseu... | NR_027786.1 | 44.8% | 1_92del;702_1357del | |
| 8 | human | 253190 | SERHL2 | serine hydrolase like 2 | NM_001284334.2 | 43.4% | 35.4% | (many diffs) |
| 9 | human | 253190 | SERHL2 | serine hydrolase like 2 | NR_104301.2 | 30.3% | (many diffs) | |
| 10 | human | 253190 | SERHL2 | serine hydrolase like 2 | NR_104300.2 | 30% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 678
- ORF length:
- 609
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCTGAGAAC GCCGCACCAG GTCTGATCTC AGAGCTGAAG CTGGCTGTGC 121 CCTGGGGCCA CATCGCAGCC AAAGCCTGGG GCTCCCTGCA GGGCCCTCCA GTTCTCTGCC 181 TGCACGGCTG GCTGGACAAT GCCAGCTCCT TCGACAGACT CATCCCTCTT CTCCCGCAAG 241 ACTTTTATTA CGTTGCCATG GATTTCGGAG GTCATGGGCT CTCGTCCCAT TACAGCCCAG 301 GTGTCCCATA TTACCTCCAG ACTTTTGTGA GTGAGATCCG AAGAGTTGTG GCAGCCTTGA 361 AATGGAATCG ATTCTCCATT CTGGGCCACA GCTTCGGTGG CGTCGTGGGC GGAATGTTTT 421 TCTGTACCTT CCCCGAGATG GTGGATAAAC TTATCTTGCT GGACACGCCG CTCTTTCTCC 481 TGGAATCAGA TGAAATGGAG AACTTGCTGA CCTACAAGCG GAGAGCCATA GAGCACGTGC 541 TGCAGGTAGA GGCCTCCCAG GAGCCCTCGC ACGTGTTCAG CCTGAAGCAG CTGCTGCAGA 601 GGCAGAGAAC AGCATTGACT TCGTCAGCAG GGAGCTGTGT GCGCATTCCA TCAGGAAGCT 661 GCAGGCCCAT GTCCTGTTTG CCAACTTTCT TGTACAAAGT TGGcattata agaaagcatt 721 gcttatcaat ttgttgcaac gaac