Construct: ORF ccsbBroadEn_10545

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018183.1_s300c1, BRDN0000455275
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HMGB3P1 (128872)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3149 HMGB3 high mobility group box 3 NM_001301228.1 60.6% 57% (many diffs)
2 human 3149 HMGB3 high mobility group box 3 NM_001301229.2 60.6% 57% (many diffs)
3 human 3149 HMGB3 high mobility group box 3 NM_005342.4 60.6% 57% (many diffs)
4 human 3149 HMGB3 high mobility group box 3 XM_024452369.1 60.6% 57% (many diffs)
5 human 3149 HMGB3 high mobility group box 3 NM_001301231.2 55.1% 51.8% (many diffs)
6 human 128872 HMGB3P1 high mobility group box 3 p... NR_002165.1 43.9% 1_495del;886_888delTAA
7 mouse 15354 Hmgb3 high mobility group box 3 NM_001293623.1 57.5% 56% (many diffs)
8 mouse 15354 Hmgb3 high mobility group box 3 NM_001293624.1 57.5% 56% (many diffs)
9 mouse 15354 Hmgb3 high mobility group box 3 NM_001293625.1 57.5% 56% (many diffs)
10 mouse 15354 Hmgb3 high mobility group box 3 NM_008253.4 57.5% 56% (many diffs)
11 mouse 15354 Hmgb3 high mobility group box 3 XM_006527842.3 57.5% 56% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
459
ORF length:
390
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCAAAGGCG GATAAAGTGC ACTGTGATAG AGAAATGAAG GATTATGGAC
121CAGCTAAGGG AGGCAAGAAC GATCCTAATG CCCCCAAAAG GCCACTGTCT GGATTCTTCC
181TGTTCTGTTC AGAATTCTGC CCCAAGATCA AATCCACAAA CCCTGGCATC TCTATTGGAG
241ACGTGGCAAA AAAGCTGGGT GAGATGTGGA ATAACTTAAA TGACAGTGAA AAGCAGCCTT
301ATGTCACTAA GGTGGCAAAG CTGAAGAAGT ATGAGAAGGA TGTTGCTGAC TATAAGTCGA
361AAGGAAAGTT GGACGGCACA AAAGGTCCTG CTAAAGTTGC CTGGGAAAAG ATGGAAGAAG
421AAGATGAAGA AGATGGGGAG GAAGAGAAGG AGGATGAATT GCCAACTTTC TTGTACAAAG
481TTGGcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)