Construct: ORF ccsbBroadEn_10550
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006566.1_s300c1, BRDN0000455244
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC00934 (144742)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 144742 | LINC00934 | long intergenic non-protein... | NR_024246.2 | 12.1% | 1_1398del;1678_2291del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 348
- ORF length:
- 279
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGGAAGCTCA TGCATCCTTG GCACCTGGAT CAGGGTCTCA ATCAGATGCC 121 AGTCTCCCCA GACTTCAGGG AATTCACAGC AAACTAGAGA TATTTCCTGT AAGTTCCTCT 181 CACCAGGCAA GGCTGTGGTC AGGAGTCATT GCCTCTCTCC TCTTCCAAGG GGACTGAGAC 241 TAACTTCATA CTGGACTACT TTCTCCAGAA AAATCCTCTC CCCAGTTTCC AACTTCAGCC 301 TTTTCAGAGA TGGCCGTTGG ACCAAGAGTC AGAAAACTAT TTCCATTTTG CCAACTTTCT 361 TGTACAAAGT TGGcattata agaaagcatt gcttatcaat ttgttgcaac gaac