Construct: ORF ccsbBroadEn_10554
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017200.1_s300c1, BRDN0000394318
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC00905 (148231)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 148231 | LINC00905 | long intergenic non-protein... | NR_110321.1 | 39.7% | (many diffs) | |
| 2 | human | 148231 | LINC00905 | long intergenic non-protein... | NR_024335.2 | 35.5% | 1_328del;769A>G;944_1728del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 684
- ORF length:
- 615
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAATAGTTGG CCATGGCTCT TTGATAGCAA TTTTTGTTCT GCCGTAGAAA 121 TTATCCTTGA ACCAGAAAAA AAAATCCCCA ATTCAACACT CCATTTTTGT GAAGAGCTGG 181 TTCCGAATTC TGGGTCACTT TTTGGAAAAA ATATCTGTTG TGGTAAACAG TGCTGCATCT 241 GTGATCTCAA GTCTCTACTG GAATTGGATA GAGATGGTGA ATTTCAGCCA GAGCGCCCAA 301 AGAACTCGTG TCCCGCGCTC CTGAACGCCA TCAGCCGCCG CACCTCCATC TTCCCTCCTC 361 CCACGAGTCT CCTGCTCCCC GTGACTCTGG CCTCCTCGCA GTGTTGCTGG GCCACGTCAG 421 GAAGTGCTGG AGGACGTGGC ATTGCACCAA CACCAGGCGG CCAGCCGTGT GGCTCATCCC 481 GCAAATCAGG CTCTTCCTGT GCATGGAGGT GGAGTCCCTC TGGAGGCAGC CCGTGGCCCT 541 GTTCTCGGGC AGGTGGAGCA TGGAGACGAC TGGGAACTTC ACTAGACACG CATCCAGCCG 601 GTTCAAGGGC TTGTCGCGCC GTGCACCAGC TTGCAGGAGA AAGCCCAACG CCTCGCCAAG 661 CACGAAGGCC TCCCTTCCCG ACTTTGCCAA CTTTCTTGTA CAAAGTtggc attataagaa 721 agcattgctt atcaatttgt tgcaacgaac