Construct: ORF ccsbBroadEn_10594
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017471.1_s300c1, BRDN0000455376
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC00346 (283487)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 283487 | LINC00346 | long intergenic non-protein... | NR_027701.1 | 7.7% | 1_518del;1011_6322del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 561
- ORF length:
- 492
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAGGCCTCAG CCAAGAGGAG GTTCGGGAAG AAAGGAAAAC ACAGGTGAGG 121 AGAGAGAAGG GCGGGCAGAG AGGTACCACG CCATTAGTGC TGATGGGGAG AGGCGGCTCC 181 AGCCCGGCAC TGCTGTCCTT ACGAGGCATG TTTCCTTTTT ATTCGGAGGA AGAGAAGCAG 241 AGGAACACGT CATGGAGACG GACCGAGTTG AAGGAGCCAG GGATGGTGAC AAGCGGAAGG 301 AAGTGTGTTT TGTCCCCATC CAGGGAAGCT TTTGTTTCAT GAGACTTACT TGCGCACGTC 361 TGGTAGCTGC CCTGGACATT CATGGACTTT CGTTTTCACT CAGATTTTGT GGTTCACGTG 421 ACACAAAGCA TGAGGACATC ACTGGGCGAG AGGGCCAGGT CACCCCACTG CCGAGGGGCA 481 CGCCCCAGCT GTGCACCGCT AGAGTGGGCT TGTCCAGTCC TCGGACACGG GGACAGGGTG 541 TGCCCATCTC ATGTAAGACA TTGCCAACTT TCTTGTACAA AGTTGGcatt ataagaaagc 601 attgcttatc aatttgttgc aacgaac