Construct: ORF ccsbBroadEn_10633
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018211.1_s300c1, BRDN0000455341
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC01561 (404216)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 404216 | LINC01561 | long intergenic non-protein... | NR_103717.1 | 17.5% | 1_362del;747_2186del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 453
- ORF length:
- 384
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCCTGGAGA GTCCCAGGGG TGAGGCCAGC AAGTACTTTC TTCCCCCAGG 121 TGCTCAGAGC ATCCTCTGAG TTGCCAAACA GACTCCCAGA GGGGTCAACT GTGGGCCCTA 181 AACCAGACAG CAGCTGGGAA GCAGGCTCTC AGGGGAACTG GGGTCTCACC AGCTCAGGAG 241 CAGGCCAGGA CTCCTCAGCA CAGAAGCTGG GAATCTTGAG TGTCCAGATC AGCCTGAAAA 301 TCTGGACTTG GGAAAAGCCA TCTGGCTGGG GCCACCTGCA TGCCGCTGTG ACTGGGGCAT 361 CCTGCTGCTC TCCTCTCTCA CAAGGTGGTG CCATCTGCCT TGTCACTGCT CCTCAGGACA 421 AGCCTGACTG CTCTCCCTGC ACCTCTGGCC ATTTGCCAAC TTTCTTGTAC AAAGTTGGca 481 ttataagaaa gcattgctta tcaatttgtt gcaacgaac