Construct: ORF ccsbBroadEn_10636
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004915.1_s300c1, BRDN0000455294
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC01555 (439927)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 439927 | LINC01555 | long intergenic non-protein... | NR_027379.1 | 12.7% | 1_128del;498_2884del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 438
- ORF length:
- 369
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCTGGGTCCC AATGCCCAAG TGACTGTAGT TGTGGCTCAG CCAGGACCCG 121 ACCATTTAGA TCACCTGTTG TTAGACACGC AACACTGTCA ACATAGTTCC TGTGGGTCAG 181 CAGCCTGTAC ACAGCTTACC TGGGTCCCCT GCTTGGGGGG ATCTCACAAG GCTTCAATCA 241 AGATGTCAGC CCAGGCTGTG GTCTCCACTG AGGCTCCGTG GGAAAGACCC TGCTTCCAAG 301 CTCACCTAGG TTGTTTGCAA AATTCGGTTC TTTGCAGCTG TAGAATGGAG GGCTTCAGTT 361 TATTTCTAGC TATGCTGTGG GGCGGGGTGG GGGAGCTGCC CTCAGATCCT AGAGGTCACC 421 TGCAATTCCT TGCCACTTTG CCAACTTTCT TGTACAAAGT TGGcattata agaaagcatt 481 gcttatcaat ttgttgcaac gaac