Construct: ORF ccsbBroadEn_10641
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010698.1_s300c1, BRDN0000455501
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BAIAP2-DT (440465)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 440465 | BAIAP2-DT | BAIAP2 divergent transcript | NR_026857.1 | 12.4% | 1_2081del;2634_4421del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 621
- ORF length:
- 552
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCCTGTCAAG GGAGCTTCCT CTCTCCTCTT CCTCCCCCTC CCACCTTCTG 121 CCTGGCAGCT TTGCCTTCTC TCCAAGAGAA GGGTCCACCC AATCAGAACT CCTCTTCCTT 181 TTCATTCCTG GATTAAAGCA CTTGTAATCA GTAACCAGAA AGTTCCAGAG CGGGAGAGAC 241 CGGAAGGCAC TGGAGTGCTA TCGGACGGGT GTCTGGGGCA GAGCCAGGAG GGCGAGCCTC 301 TTCTCTCCCC GCCTGCCCTT GCTCACTTCC CCCTCCATGC CAGGTGCTGT GGGAGCAGCT 361 GGGCCTGGCC GGGGTCGGCG GGTGAAGCTA TCCGCATGGT GTCTGGAGCA CCGTTTCTTT 421 GCTTCCTGGA TGGGCTGGAT GGGCTCCCGT GTTCTTCACC AATGGCAGCG TTACCAGCAC 481 CAATGGCAGC GTTACCAGCA AGAAGGCAAA GGCAGGAGCA CATCGAGGGT GGGAGCCAGG 541 GCTGTGGGGT CAGGAGTCCC GCTCCTTGCC GCGGGAAGCC TGGCTCAGCC ACCTCCAGCA 601 CACTTCGGCT TTGTCCAGCA TTGCCAACTT TCTTGTACAA AGTTGGcatt ataagaaagc 661 attgcttatc aatttgttgc aacgaac