Construct: ORF ccsbBroadEn_10664
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014743.1_s300c1, BRDN0000388045
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CLEC19A (728276)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 728276 | CLEC19A | C-type lectin domain contai... | NM_001256720.2 | 66.5% | 65% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 477
- ORF length:
- 408
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCAAAGGTGG ACACTGTGGG CTGCAGCCTT CCTGACCCTC CACTCTGCAC 121 AGGCCTTTCC ACAAACAGAC ATCAGTATCA GTCCAGCCCT GCCAGAGCTG CCCCTGCCTT 181 CCCTGTGCCC CCTGTTCTGG ATGGAGTTCA AAGGCCACTG CTATCGATTC TTCCCTCTCA 241 ATAAGACCTG GGCTGAGGCC GACCTCTACT GTTCTGAGTT CTCTGTGGGC AGGAAGTCCG 301 CCAAGCTGGC CTCCATCCAC AGCTGGGAGG AGAATGTCTT TGTATATGAC CTCGTGAACA 361 GCTGTGTTCC CGGCATCCCA GCTGACGTCT GGACAGGCCT TCATGATCAC AGACAGGTGA 421 GAAAGCAGTG GCCATTGGGC CCCCTTGGAA GCTCCAGCCA GGATTCTATT TTGATTTTGC 481 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 541 aac