Construct: ORF ccsbBroadEn_10738

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016161.1_s300c1, BRDN0000390001
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CLK2 (1196)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1196 CLK2 CDC like kinase 2 NM_001294338.2 100% 100%
2 human 1196 CLK2 CDC like kinase 2 NM_003993.4 99.7% 99.7% 398_399insGCA
3 human 1196 CLK2 CDC like kinase 2 XM_011509143.2 99.7% 99.7% 168_169insAGC
4 human 1196 CLK2 CDC like kinase 2 NM_001363704.2 99.5% 99.5% 168_169insAGC;395_396insGCA
5 human 1197 CLK2P1 CDC like kinase 2, pseudoge... NR_002711.3 61.8% (many diffs)
6 human 1196 CLK2 CDC like kinase 2 NM_001294339.2 54.3% 54.3% 0_1ins684
7 mouse 12748 Clk2 CDC-like kinase 2 NM_007712.4 92.2% 96.6% (many diffs)
8 mouse 12748 Clk2 CDC-like kinase 2 NM_001163432.2 92% 96.4% (many diffs)
9 mouse 105943584 Gm45927 predicted gene, 45927 NM_001310016.1 57% 57.2% (many diffs)
10 mouse 105943584 Gm45927 predicted gene, 45927 NM_001310017.1 30.5% 28.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1563
ORF length:
1497
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCC GCATCCTCGA AGGTACCACT CCTCAGAGCG AGGCAGCCGG GGGAGTTACC
121GTGAACACTA TCGGAGCCGA AAGCATAAGC GACGAAGAAG TCGCTCCTGG TCAAGTAGTA
181GTGACCGGAC ACGACGGCGT CGGCGAGAGG ACAGCTACCA TGTCCGTTCT CGAAGCAGTT
241ATGATGATCG TTCGTCCGAC CGGAGGGTGT ATGACCGGCG ATACTGTGGC AGCTACAGAC
301GCAACGATTA TAGCCGGGAT CGGGGAGATG CCTACTATGA CACAGACTAT CGGCATTCCT
361ATGAATATCA GCGGGAGAAC AGCAGTTACC GCAGCCAGCG CAGCAGCCGG AGGAAGCACA
421GACGGCGGAG GAGGCGCAGC CGGACATTTA GCCGCTCATC TTCGCAGCAC AGCAGCCGGA
481GAGCCAAGAG TGTAGAGGAC GACGCTGAGG GCCACCTCAT CTACCACGTC GGGGACTGGC
541TACAAGAGCG ATATGAAATC GTTAGCACCT TAGGAGAGGG GACCTTCGGC CGAGTTGTAC
601AATGTGTTGA CCATCGCAGG GGTGGGGCTC GAGTTGCCCT GAAGATCATT AAGAATGTGG
661AGAAGTACAA GGAAGCAGCT CGACTTGAGA TCAACGTGCT AGAGAAAATC AATGAGAAAG
721ACCCTGACAA CAAGAACCTC TGTGTCCAGA TGTTTGACTG GTTTGACTAC CATGGCCACA
781TGTGTATCTC CTTTGAGCTT CTGGGCCTTA GCACCTTCGA TTTCCTCAAA GACAACAACT
841ACCTGCCCTA CCCCATCCAC CAAGTGCGCC ACATGGCCTT CCAGCTGTGC CAGGCTGTCA
901AGTTCCTCCA TGATAACAAG CTGACACATA CAGACCTCAA GCCTGAAAAT ATTCTGTTTG
961TGAATTCAGA CTATGAGCTC ACCTACAACC TAGAGAAGAA GCGAGATGAG CGCAGTGTGA
1021AGAGCACAGC TGTGCGGGTG GTAGACTTTG GCAGTGCCAC CTTTGACCAT GAGCACCATA
1081GCACCATTGT CTCCACTCGC CATTACCGAG CACCAGAAGT CATCCTTGAG TTGGGCTGGT
1141CACAGCCTTG TGATGTGTGG AGTATAGGCT GCATCATCTT TGAATACTAT GTGGGATTCA
1201CCCTCTTCCA GACCCATGAC AACAGAGAGC ATCTAGCCAT GATGGAAAGG ATCTTGGGTC
1261CTATCCCTTC CCGGATGATC CGAAAGACAA GAAAGCAGAA ATATTTTTAC CGGGGTCGCC
1321TGGATTGGGA TGAGAACACA TCAGCTGGGC GCTATGTTCG TGAGAACTGC AAACCGCTGC
1381GGCGGTATCT GACCTCAGAG GCAGAGGAAC ACCACCAGCT CTTCGATCTG ATTGAAAGCA
1441TGCTAGAGTA TGAACCAGCT AAGCGGCTGA CCTTGGGTGA AGCCCTTCAG CATCCTTTCT
1501TCGCCCGCCT TCGGGCTGAG CCGCCCAACA AGTTGTGGGA CTCCAGTCGG GATATCAGTC
1561GGTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
1621gcaacgaac

Download FASTA (ORF) (Full)

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