Construct: ORF ccsbBroadEn_10796
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006184.1_s300c1, BRDN0000386353
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PHC1 (1911)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1911 | PHC1 | polyhomeotic homolog 1 | XM_017018958.1 | 47.2% | 47.1% | 1_1497del;1903A>G |
| 2 | human | 1911 | PHC1 | polyhomeotic homolog 1 | XM_017018957.1 | 46.8% | 46.7% | 1_1521del;1927A>G |
| 3 | human | 1911 | PHC1 | polyhomeotic homolog 1 | XM_017018956.1 | 46.3% | 46.3% | 1_1548del;1954A>G |
| 4 | human | 1911 | PHC1 | polyhomeotic homolog 1 | XM_011520600.2 | 46% | 45.9% | 1_1572del;1978A>G |
| 5 | human | 1911 | PHC1 | polyhomeotic homolog 1 | XM_005253334.3 | 44.8% | 44.7% | 1_1647del;2053A>G |
| 6 | human | 1911 | PHC1 | polyhomeotic homolog 1 | NM_004426.3 | 44.4% | 44.4% | 1_1671del;2077A>G |
| 7 | human | 1911 | PHC1 | polyhomeotic homolog 1 | XM_011520599.2 | 44% | 44% | 1_1698del;2104A>G |
| 8 | human | 1911 | PHC1 | polyhomeotic homolog 1 | XM_011520603.2 | 43.7% | 43.6% | 1_1722del;2128A>G |
| 9 | human | 1911 | PHC1 | polyhomeotic homolog 1 | XM_017018955.2 | 43.7% | 43.6% | 1_1722del;2128A>G |
| 10 | mouse | 13619 | Phc1 | polyhomeotic-like 1 (Drosop... | XM_017321382.1 | 43.2% | 43.9% | (many diffs) |
| 11 | mouse | 13619 | Phc1 | polyhomeotic-like 1 (Drosop... | NM_001042623.2 | 40.9% | 41.6% | (many diffs) |
| 12 | mouse | 13619 | Phc1 | polyhomeotic-like 1 (Drosop... | XM_006505500.1 | 39.7% | 40.3% | (many diffs) |
| 13 | mouse | 13619 | Phc1 | polyhomeotic-like 1 (Drosop... | NM_001271579.1 | 38.8% | 39.5% | (many diffs) |
| 14 | mouse | 13619 | Phc1 | polyhomeotic-like 1 (Drosop... | NM_007905.3 | 38.8% | 39.5% | (many diffs) |
| 15 | mouse | 13619 | Phc1 | polyhomeotic-like 1 (Drosop... | XM_017321381.1 | 38.2% | 38.8% | (many diffs) |
| 16 | mouse | 13619 | Phc1 | polyhomeotic-like 1 (Drosop... | XM_006505499.3 | 37.8% | 38.4% | (many diffs) |
| 17 | mouse | 13619 | Phc1 | polyhomeotic-like 1 (Drosop... | XM_006505498.1 | 37.7% | 38.3% | (many diffs) |
| 18 | mouse | 13619 | Phc1 | polyhomeotic-like 1 (Drosop... | NR_073364.1 | 30.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1407
- ORF length:
- 1341
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC AGGTACAGTG CAGTCTGGTC AGGCCCATTT GGCCTCCTCG CCACCTTCAT 121 CCCAGGCTCC TGGTGCACTG CAGGAGTGCC CTCCCACATT GGCCCCTGGG ATGACCCTTG 181 CTCCTGTGCA GGGGACAGCA CATGTGGTAA AGGGTGGGGC TACCACCTCC TCACCTGTTG 241 TAGCCCAGGT CCCTGCTGCC TTCTATATGC AGTCTGTGCA CTTGCCGGGT AAACCCCAGA 301 CATTGGCTGT CAAACGCAAG GCTGACTCTG AGGAGGAGAG AGATGATGTC TCCACATTGG 361 GTTCAATGCT TCCTGCCAAG GCATCTCCAG TAGCAGAAAG CCCAAAAGTC ATGGACGAGA 421 AGAGCAGTCT TGGAGAAAAA GCTGAATCAG TGGCTAATGT GAATGCTAAT GCTCCAAGCA 481 GTGAACTAGT AGCCTTGACC CCCGCCCCTT CAGTACCGCC TCCTACACTA GCCATGGTGT 541 CTAGACAAAT GGGTGACTCA AAACCCCCAC AGGCCATCGT GAAGCCCCAG ATTCTCACCC 601 ACATCATTGA AGGCTTTGTT ATCCAGGAAG GAGCAGAACC TTTCCCGGTG GGTTGTTCTC 661 AGTTACTGAA GGAGTCTGAG AAGCCACTAC AGACTGGCCT TCCGACAGGG CTGACTGAGA 721 ATCAGTCAGG TGGCCCTTTG GGAGTGGACA GCCCATCTGC TGAGTTAGAT AAGAAGGCGA 781 ATCTCCTGAA GTGCGAGTAC TGTGGGAAGT ACGCCCCCGC AGAGCAGTTT CGTGGCTCTA 841 AGAGGTTCTG CTCCATGACT TGCGCTAAGA GGTACAATGT GAGCTGTAGC CATCAGTTCC 901 GGCTGAAGAG GAAAAAAATG AAAGAGTTTC AAGAAGCCAA CTATGCTCGC GTTCGCAGGC 961 GTGGACCCCG CCGCAGCTCC TCTGACATTG CCCGTGCCAA GATTCAGGGC AAGTGCCACC 1021 GGGGTCAAGA AGACTCTAGC CGGGGTTCAG ATAATTCCAG TTATGATGAA GCACTCTCTC 1081 CAACATCTCC TGGGCCTTTA TCAGTAAGAG CTGGGCATGG AGAACGTGAC CTGGGGAATC 1141 CCAATACAGC TCCACCTACA CCGGAATTAC ATGGCATCAA CCCTGTGTTC CTGTCCAGTA 1201 ATCCCAGCCG TTGGAGTGTA GAGGAGGTGT ACGAGTTTAT TGCTTCTCTC CAAGGCTGCC 1261 AAGAGATTGC AGAGGAATTT CGCTCACAGG AGATTGATGG ACAGGCCCTT TTATTACTTA 1321 AAGAAGAACA TCTTATGAGT GCCATGAACA TCAAGCTGGG CCCTGCCCTC AAGATCTGCG 1381 CCAAGATAAA TGTCCTCAAG GAGACCTACC CAACTTTCTT GTACAAAGTt ggcattataa 1441 gaaagcattg cttatcaatt tgttgcaacg aac