Construct: ORF ccsbBroadEn_10836
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014895.1_s300c1, BRDN0000390021
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GALNT3 (2591)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2591 | GALNT3 | polypeptide N-acetylgalacto... | NM_004482.4 | 21% | 19.5% | (many diffs) |
| 2 | human | 2591 | GALNT3 | polypeptide N-acetylgalacto... | XM_005246449.1 | 21% | 19.5% | (many diffs) |
| 3 | human | 2591 | GALNT3 | polypeptide N-acetylgalacto... | XM_011510929.1 | 21% | 19.5% | (many diffs) |
| 4 | human | 2591 | GALNT3 | polypeptide N-acetylgalacto... | XM_017003770.1 | 21% | 19.5% | (many diffs) |
| 5 | human | 2591 | GALNT3 | polypeptide N-acetylgalacto... | XR_002959253.1 | 20.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 489
- ORF length:
- 423
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA AAGGAACATG AAAAACAAAA ACAAGATGTT GGATTTAATG CTAGAAGCTG 121 TAAACAATAT TAAGGATGCC ATGCCAAAAA TGCAAATAGG AGCACCTGTC AGGCAAAACA 181 TTGATGCTGG TGAGAGACCT TGTTTGCAAG GATATTATAC AGCAGCAGAA TTGAAGCCTG 241 TCCTTGACCG TCCACCTCAG GATTCAAATG CACCTGGTGC TTCTGGTAAA GCATTCAAGA 301 CAACCAATTT AAGTGTTGAA GAGCAAAAGG AAAAGGAACG TGGGGAAGCT AAACACTGCT 361 TTAATGCTTT CGCAAGTGAC AGGATTTCTT TGCACCGAGA TCTTGGACCA GACACTCGAC 421 CTCCTGAGTA TGTTGAAGAA TATTTATTGT TTATTCTTTA TCACCAGGCT TTGCAGGGGA 481 GAGAGGGGTG CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 541 tttgttgcaa cgaac