Construct: ORF ccsbBroadEn_10960
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016820.1_s300c1, BRDN0000455702
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MAZ (4150)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4150 | MAZ | MYC associated zinc finger ... | XM_006721047.4 | 56.1% | 56.1% | 1_618del |
| 2 | human | 4150 | MAZ | MYC associated zinc finger ... | NM_001042539.3 | 53.5% | 53.5% | 1_687del |
| 3 | human | 4150 | MAZ | MYC associated zinc finger ... | NM_001276275.2 | 48.4% | 43.4% | (many diffs) |
| 4 | human | 4150 | MAZ | MYC associated zinc finger ... | NM_002383.4 | 46.2% | 41.5% | (many diffs) |
| 5 | human | 4150 | MAZ | MYC associated zinc finger ... | XR_002957805.1 | 25.8% | 1_1012del;1431_1569del;1944_3063del | |
| 6 | human | 4150 | MAZ | MYC associated zinc finger ... | XR_002957806.1 | 24.9% | (many diffs) | |
| 7 | mouse | 17188 | Maz | MYC-associated zinc finger ... | XM_006507402.1 | 50.6% | 52.9% | (many diffs) |
| 8 | mouse | 17188 | Maz | MYC-associated zinc finger ... | XM_017322009.1 | 50.6% | 52.9% | (many diffs) |
| 9 | mouse | 17188 | Maz | MYC-associated zinc finger ... | XM_017322010.1 | 43.2% | 41.1% | (many diffs) |
| 10 | mouse | 17188 | Maz | MYC-associated zinc finger ... | NM_010772.1 | 43.1% | 41.1% | (many diffs) |
| 11 | mouse | 17188 | Maz | MYC-associated zinc finger ... | XR_001785483.1 | 26.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 858
- ORF length:
- 792
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT GCCCCTGAGC CTCCTGAGCG TGCCCCAGCT GAGCGGAGCC GGCGGGGGAG 121 GGGGAGAGGC GGGTGCCGGC GGCGGCGCTG CCGCAGTGGC CGCCGGTGGC GTGGTGACCA 181 CGACCGCCTC GGGGAAGCGC ATCCGGAAGA ACCATGCCTG CGAGATGTGT GGCAAGGCCT 241 TCCGCGACGT CTACCACCTG AACCGACACA AGCTGTCGCA CTCGGACGAG AAGCCCTACC 301 AGTGCCCGGT GTGCCAGCAG CGCTTCAAGC GCAAGGACCG CATGAGCTAC CACGTGCGCT 361 CACATGACGG CGCTGTGCAC AAGCCCTACA ACTGCTCCCA CTGTGGCAAG AGCTTCTCCC 421 GGCCGGATCA CCTCAACAGT CACGTCAGAC AAGTGCACTC AACAGAACGG CCCTTCAAAT 481 GTGAGAAATG TGAGGCAGCT TTCGCCACGA AGGATCGGCT GCGGGCGCAC ACAGTACGAC 541 ACGAGGAGAA AGTGCCATGT CACGTGTGTG GCAAGATGCT GAGCTCGGCT TATATTTCGG 601 ACCACATGAA GGTGCACAGC CAGGGTCCTC ACCATGTCTG TGAGCTCTGC AACAAAGGCT 661 TCACCACGGC AGCATACCTG CGCATCCACG CGGTGAAGGA CCACGGGCTC CAGGCCCCGC 721 GGGCTGACCG CATCCTGTGC AAGCTGTGCA GCGTGCACTG CAAGACCCCT GCCCAGCTGG 781 CCGGCCACAT GCAGACCCAT CTGGGGGGGG CCGCCCCCCC TGTCCCGGGA GACGCCCCCC 841 AGCCACAGCC CACCTGCTGC CCAACTTTCT TGTACAAAGT TGGcattata agaaagcatt 901 gcttatcaat ttgttgcaac gaac